GBrowse Details

Vigan.05G100500.01

Basic Information:
Name: Vigan.05G100500.01
Multiple alignment
Variant Information
Position: Chr05:7755712..7761574 (- strand)
Length: 5863
Functional Information:
Description: Similar to Phosphoglycerate mutase family protein. [XP_007026442.1, Theobroma cacao]
InterPro: Histidine phosphatase superfamily, clade-1 (IPR013078)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.01,20.66,8.00,27.76,4.57,8.34,3.56,11.04
Arabidopsis thaliana homolog: AT3G52155.1
Automatic updates:
Name: NM_001251231 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305626 (LOC100305626), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:7755712..7756240 (- strand)
Length: 529
Type: three_prime_UTR
Position: Chr05:7756241..7756303 (- strand)
Length: 63
Type: CDS
Position: Chr05:7759560..7759677 (- strand)
Length: 118
Type: CDS
Position: Chr05:7760238..7760417 (- strand)
Length: 180
Type: CDS
Position: Chr05:7760513..7760612 (- strand)
Length: 100
Type: CDS
Position: Chr05:7761241..7761478 (- strand)
Length: 238
Type: CDS
Position: Chr05:7761479..7761574 (- strand)
Length: 96
Type: five_prime_UTR


>Vigan.05G100500.01
GTAAAATTAT ACAATGTGTG TTTGTAATTG AGAAAGTCAA GGAAAGAGGA AAGGCTAAAA TCCTTAAAGT GTGACATTTC
ATCAGAGATA GAGAGCATGA ATGTGGGTTT GTGCGAGATG CATTCTGTAA TCTGTACCAC CGCCGTCGCA CCTGACTTTT
CCGGTCGCCG GAGCAAAGTT CGGAACCCTA ATCAATTACG CGCTAAATCC TCTCTGCTCA TTCAAAAGCA GGATACCCAA
CTCGCAGAAC CCTTATCCGA CTCCGTCTCC GTCTCCCGCC GCCTCATTCT CCTTCGCCAT GCTAAGAGTT CCTGGGCAAA
CCGCTCGCTC CGCGACCATG ATCGGCCTCT GAGCAAGTCT GGGAAAGAGG ATGCTGTGAG AGTTTCCCGC AAGCTCCAAG
AGTTGGGTTG GATTCCTGAA CTTATATTGT CTAGTGATGC AGCGCGGACT AAGGAGACAC TTAAAATAAT GCAAGAGCAA
GTGCAGGAGC TGGTGGAGGC TGAGGTTCAT TTTATTTCTA GTTTCTATTC AATTGCAGCT ATGGATGGGC AAACTGCAGA
GCACCTTCAA AAGGTTATTT GTAGATATTC AAAGGATGAG ATACTTACTG TCATGTGCAT GGGACATAAT AGGGGGTGGG
AAGAAGCAGC ATCAATGTTT TCCGGGGCCT CTGTGGAATT AAAAACATGC AATGCTGCAC TGCTTGAGAC TGCTGGAAAA
TCTTGGGACG AGGCATTTGC CGCCGCAGGA TTTGGTGGAT GGAAGCTTCA AGGCATAGTA AAGCCAAGTA GCTAGCTTGC
TGTGACTTTC CTGCTGGGTA AACTTACAAA TAAATATGCA AGAGGTTGGA AGCGTCAATA CTTATTCAAG CAAACCTAAA
AGGCCTCAGT TAGGTAAAGG CTACAGTACT GATGACTTCG GAAAGTATAT ACTGGAGGAT ATGATGCCAA AAGCTTCAGT
TAGATCTGTT TAATTTAGCA GCTGTGATGT TTACATGGTG ATTCAAGATG ATACATGGCT GAGGATAATG TGCAGGATCT
CAATGGTTCA TATATGCTGC TTGGTATGGG TCATTTGTTC ATTGAAGTGA ACTTATGCTG CTAGGTGGTT GTTGATTCAT
ACTCAACTAC AGGTTTCCAA AGAAAAAAAA ATAATGCTTC TGTAAATCAT ATGCTGTGAA AAGAAAAAGC ATTACTTGTT
ACTTTTCTCC CTTTTTACTC CGTTCTTCTC TTACATTTTG ATAATAAAGA CTGAAAATCT ATTTTGAAAT ACCAAAATGC
TATTGGTTAA TGATTATCAG CAACCAAAAC GACAAGAATT CCCG

>Vigan.05G100500.01
ATGAATGTGG GTTTGTGCGA GATGCATTCT GTAATCTGTA CCACCGCCGT CGCACCTGAC TTTTCCGGTC GCCGGAGCAA
AGTTCGGAAC CCTAATCAAT TACGCGCTAA ATCCTCTCTG CTCATTCAAA AGCAGGATAC CCAACTCGCA GAACCCTTAT
CCGACTCCGT CTCCGTCTCC CGCCGCCTCA TTCTCCTTCG CCATGCTAAG AGTTCCTGGG CAAACCGCTC GCTCCGCGAC
CATGATCGGC CTCTGAGCAA GTCTGGGAAA GAGGATGCTG TGAGAGTTTC CCGCAAGCTC CAAGAGTTGG GTTGGATTCC
TGAACTTATA TTGTCTAGTG ATGCAGCGCG GACTAAGGAG ACACTTAAAA TAATGCAAGA GCAAGTGCAG GAGCTGGTGG
AGGCTGAGGT TCATTTTATT TCTAGTTTCT ATTCAATTGC AGCTATGGAT GGGCAAACTG CAGAGCACCT TCAAAAGGTT
ATTTGTAGAT ATTCAAAGGA TGAGATACTT ACTGTCATGT GCATGGGACA TAATAGGGGG TGGGAAGAAG CAGCATCAAT
GTTTTCCGGG GCCTCTGTGG AATTAAAAAC ATGCAATGCT GCACTGCTTG AGACTGCTGG AAAATCTTGG GACGAGGCAT
TTGCCGCCGC AGGATTTGGT GGATGGAAGC TTCAAGGCAT AGTAAAGCCA AGTAGCTAG

>Vigan.05G100500.01
MNVGLCEMHS VICTTAVAPD FSGRRSKVRN PNQLRAKSSL LIQKQDTQLA EPLSDSVSVS RRLILLRHAK SSWANRSLRD
HDRPLSKSGK EDAVRVSRKL QELGWIPELI LSSDAARTKE TLKIMQEQVQ ELVEAEVHFI SSFYSIAAMD GQTAEHLQKV
ICRYSKDEIL TVMCMGHNRG WEEAASMFSG ASVELKTCNA ALLETAGKSW DEAFAAAGFG GWKLQGIVKP SS*