GBrowse Details

Vigan.05G102600.01

Basic Information:
Name: Vigan.05G102600.01
Multiple alignment
Variant Information
Position: Chr05:7882423..7886746 (+ strand)
Length: 4324
Functional Information:
Description: Similar to Uncharacterized protein. [I1L097, Glycine max]
InterPro: Sec20 (IPR005606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.99,24.30,16.09,17.34,12.62,9.56,7.46,16.69
Arabidopsis thaliana homolog: AT3G24315.1
Automatic updates:
Name: NM_001252806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100795925 (LOC100795925), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:7882423..7882720 (+ strand)
Length: 298
Type: five_prime_UTR
Position: Chr05:7882721..7883025 (+ strand)
Length: 305
Type: CDS
Position: Chr05:7883190..7883259 (+ strand)
Length: 70
Type: CDS
Position: Chr05:7883813..7883868 (+ strand)
Length: 56
Type: CDS
Position: Chr05:7884017..7884092 (+ strand)
Length: 76
Type: CDS
Position: Chr05:7884219..7884255 (+ strand)
Length: 37
Type: CDS
Position: Chr05:7886157..7886271 (+ strand)
Length: 115
Type: CDS
Position: Chr05:7886351..7886591 (+ strand)
Length: 241
Type: CDS
Position: Chr05:7886592..7886746 (+ strand)
Length: 155
Type: three_prime_UTR


>Vigan.05G102600.01
GTTTTATATA AATAAAAATT TAAGAAAATG TAACCACCAT CTTTAATCAG TATAAAATTA TGCATTTTAA GTATATTTCA
TTTTGAAAGA ACTACAGTGA AGCAACCAAC GAAGTCAATC AAATAATTAG AAAAGAAAAA GTGAGTTAAT AACAGAGTAA
CGAAGAGCAA AAGAAAAACA TAAACGAGAG TTGAGTAATT GAGTTCCTTA GTGGCGCTCA CAAATTGTTT AGAGATCCCA
TTAAACAGGG GAAGCAAAAA CAGCGTTGAA CACAGTAACA GAAAGCGATT GCGAGAAGAT GGAGGAATCA GAATCGACGA
TTGACAAGGT GGTGGAGGAG GTGGAAAAGG TGAAGAAGGA ATGGGATGAA ACGTACAGGA AAACGCAGAA ACATATCGAG
GCAATCGCAG AATATGGAAA ATCAGGAAGA GAGAAAGAGG AGAAAAATTC GCTCGCTAGG TTGAACGGGA TCGCTCAGGA
TGGCTTGTCA CTCCTCTCTT CCTTTCTCTT CACTCTCGAT CTTCTCGCCC CTCAGTTGCC CTCCCCGCCG GAGGTCAAAT
CTGCACGCGC ATTGCTTCAA TCCTGGAAAA CCCTAACTCA AAATTTGCGG CTGAATCTGA GGAATGCCAA TTTGCAAGCA
AAGGCTAACT TGAGGAAAAC TGCTCAGGAG GAGAGAGAAC TACTTCTAGG TGGTGGAGAA GAGTCCACTG CTCGCAGGCG
CAATTTACAG ACAAAAGCTG GAATGACATC TGCTGCAGAA AGCATCACAG AAAGCCTTCG TCGAACTCGT CAGTTGATGG
TTCAGGAGGT TGAAAGAAAC ACAAGCACAC TTATGACTCT TGATGAATCA ACTGGAGTGT TAAAGAAGGC TGAAAGTGAA
TATAAAGGGC ACCGCTCTTT GTTCATGAGA ACACGAAATC TCCTCTCCGT AATGCAACGT CAAGATGTCA TGGACAGGTT
GATTCTTGGG ATTGGCTTTT TCTTATTCTC CCTTGCTGTT CTTTATGTTG TTTCCAAGCG GATTGGACTA CTTACGTTGC
AGAGAAAGAT TACTGAGGCA ATAAAAGCTG GTGTTGTGGG ACAAGCAGAC CTAAGACCCC AAGCTGTTGC AGGGAACGTG
AATCTGCATC AAGTCAGAGT GGATCATGTT CATAATATAG AGGCTCCTTT AGAACAAAGA ATACATGATG AACTATGATG
ATATGTAAGC AATATACTCA TGTTGTCAAT GTTTATTTAT TTACATTTAG AGAGATCCTA TACCCTCAAC ACAACTTCAG
CACCCTCTTA ATTGCTTAAA GATGACAAAA GTAAAAGTAT TAGCAATCTT GATAGTTCAA AAAGCCTTTT AAT

>Vigan.05G102600.01
ATGGAGGAAT CAGAATCGAC GATTGACAAG GTGGTGGAGG AGGTGGAAAA GGTGAAGAAG GAATGGGATG AAACGTACAG
GAAAACGCAG AAACATATCG AGGCAATCGC AGAATATGGA AAATCAGGAA GAGAGAAAGA GGAGAAAAAT TCGCTCGCTA
GGTTGAACGG GATCGCTCAG GATGGCTTGT CACTCCTCTC TTCCTTTCTC TTCACTCTCG ATCTTCTCGC CCCTCAGTTG
CCCTCCCCGC CGGAGGTCAA ATCTGCACGC GCATTGCTTC AATCCTGGAA AACCCTAACT CAAAATTTGC GGCTGAATCT
GAGGAATGCC AATTTGCAAG CAAAGGCTAA CTTGAGGAAA ACTGCTCAGG AGGAGAGAGA ACTACTTCTA GGTGGTGGAG
AAGAGTCCAC TGCTCGCAGG CGCAATTTAC AGACAAAAGC TGGAATGACA TCTGCTGCAG AAAGCATCAC AGAAAGCCTT
CGTCGAACTC GTCAGTTGAT GGTTCAGGAG GTTGAAAGAA ACACAAGCAC ACTTATGACT CTTGATGAAT CAACTGGAGT
GTTAAAGAAG GCTGAAAGTG AATATAAAGG GCACCGCTCT TTGTTCATGA GAACACGAAA TCTCCTCTCC GTAATGCAAC
GTCAAGATGT CATGGACAGG TTGATTCTTG GGATTGGCTT TTTCTTATTC TCCCTTGCTG TTCTTTATGT TGTTTCCAAG
CGGATTGGAC TACTTACGTT GCAGAGAAAG ATTACTGAGG CAATAAAAGC TGGTGTTGTG GGACAAGCAG ACCTAAGACC
CCAAGCTGTT GCAGGGAACG TGAATCTGCA TCAAGTCAGA GTGGATCATG TTCATAATAT AGAGGCTCCT TTAGAACAAA
GAATACATGA TGAACTATGA 

>Vigan.05G102600.01
MEESESTIDK VVEEVEKVKK EWDETYRKTQ KHIEAIAEYG KSGREKEEKN SLARLNGIAQ DGLSLLSSFL FTLDLLAPQL
PSPPEVKSAR ALLQSWKTLT QNLRLNLRNA NLQAKANLRK TAQEERELLL GGGEESTARR RNLQTKAGMT SAAESITESL
RRTRQLMVQE VERNTSTLMT LDESTGVLKK AESEYKGHRS LFMRTRNLLS VMQRQDVMDR LILGIGFFLF SLAVLYVVSK
RIGLLTLQRK ITEAIKAGVV GQADLRPQAV AGNVNLHQVR VDHVHNIEAP LEQRIHDEL*