GBrowse Details

Vigan.05G103300.01

Basic Information:
Name: Vigan.05G103300.01
Multiple alignment
Variant Information
Position: Chr05:7931828..7946904 (+ strand)
Length: 15077
Functional Information:
Description: Similar to uncharacterized protein. [A5BQJ0, Vitis vinifera]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Synaptobrevin (IPR001388)
Longin domain (IPR010908)
Longin-like domain (IPR011012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:132.11,74.73,42.22,41.07,65.93,73.48,43.85,37.36
Automatic updates:
Name: NM_001249705 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative vesicle-associated membrane protein (LOC100500089), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001353581 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vesicle-associated membrane protein 721d (VAMP721D), mRNA.
PubMed ID: 26790563 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:7931828..7932136 (+ strand)
Length: 309
Type: five_prime_UTR
Position: Chr05:7932137..7932326 (+ strand)
Length: 190
Type: CDS
Position: Chr05:7934772..7934913 (+ strand)
Length: 142
Type: CDS
Position: Chr05:7935001..7935121 (+ strand)
Length: 121
Type: CDS
Position: Chr05:7945905..7945967 (+ strand)
Length: 63
Type: CDS
Position: Chr05:7946321..7946470 (+ strand)
Length: 150
Type: CDS
Position: Chr05:7946471..7946904 (+ strand)
Length: 434
Type: three_prime_UTR


>Vigan.05G103300.01
AAAAGTTACA ACAGAGAATT CTGACATGCG TTGTAATAAC AGGTTCACAG AAAGTTAAAA CCTCCCTATG ACCACTCTCT
CCCTCTCTTT CTCACCGCTT TCGTAAACCC CCTTCCCTGT TCTCCTTTGC CTCTTCCTCT TTCTCTCTCA ACAAATCCCA
AACAAAGCGT GTGTGAAAGA AGAATTTCGA TTTGGATGTT GGATTGAGCA AAAGCGTGAC ACCGTCACCA CTGCGGAACT
GTTTCCAGAT CTCTCTTGCA ACAACCGAAC TCCAAAACCC TACCAAACAC TCAATTCAGA TTCTCATCGA TGGGGCAGAA
GTCTCTGATC TACGCGTTCG TGTCTCGTGG AACGGTAATT CTCGCGGAGT ACACTGAATT CAGCGGAAAC TTCAACTCCA
TCGCCTTCCA GTGCCTTCAG AAGCTTCCTG CCACTAACAA CAAGTTCACC TACAATTGCG ACGCTCACAC CTTCAATTAC
CTCGTCGACA ATGGCTACAC ATATTGTATT GTTGCTGATG AATCAATTGG AAGGCAAGTG CCCATGGCTT TTTTAGAGCG
TGTCAAAGAT GATTTTGTGT CAAAATATGG TGGAGGAAGG GCCACCACAG CTCCTGCGAA CAGCCTTAAC AAGGAATTTG
GGCCAAAGTT AAAGGAACAT ATGCAGTACT GTGTTGATCA TCCCGAAGAG GTCAACAAGC TTGCGAAGGT GAAAGCTCAG
GTTTCCGAAG TTAAAGGTGT CATGATGGAG AATATTGAAA AGGTTCTGGA CAGGGGTGAA AAAATAGAGC TTCTGGTGGA
TAAGACAGAG AACCTTCATA ACCAGGCACA AGATTTCAGG ACTTCTGGAA CCAGAATCCG TCGAAAAATG TGGCTACAAA
ACATGAAGAT AAAGCTCATT GTCCTGGGAA TTCTGATAGC ACTGATCCTT GTAATAGTCC TATCCGTGTG TCGTGGGTTC
AACTGTGGGA AATAGGCACC ATTCTCTTTA TCATGTTATT TCAAGCTTGA GATTATATGA GGAAAGATCC TAATTATGTA
TCGCATGAGT TTGTATGTAA TATAGTTATA GATATAGATA AAGGTCTTAT GTTGGTCGCT TTGTTTTACT TATAAATGCT
TTATTCTACT TATAAATTGG GTTGTCGATT TGAAGTTCAG TTTCCATTTT ATTGTCATCA ATCATGTAAA TGTGTTATTT
GATCTTATTC TTTCTAATGA TTCCATTTAC GCCATTTTGC ATTATCAACC TTTATATCTA GTGAATCTGT GGCCTTCCAA
GGTTACTATT TCCTTGGAAG TAAACTTTTC AGTGAGAGTG TCGGTTGGTA GCACCAAAGA AAATTGCTGA CAGCAGAAAT
ATATGATTCT ATTTCAGTAT ATAATAGTGA GAGTTTCAGG TTAATATTT

>Vigan.05G103300.01
ATGGGGCAGA AGTCTCTGAT CTACGCGTTC GTGTCTCGTG GAACGGTAAT TCTCGCGGAG TACACTGAAT TCAGCGGAAA
CTTCAACTCC ATCGCCTTCC AGTGCCTTCA GAAGCTTCCT GCCACTAACA ACAAGTTCAC CTACAATTGC GACGCTCACA
CCTTCAATTA CCTCGTCGAC AATGGCTACA CATATTGTAT TGTTGCTGAT GAATCAATTG GAAGGCAAGT GCCCATGGCT
TTTTTAGAGC GTGTCAAAGA TGATTTTGTG TCAAAATATG GTGGAGGAAG GGCCACCACA GCTCCTGCGA ACAGCCTTAA
CAAGGAATTT GGGCCAAAGT TAAAGGAACA TATGCAGTAC TGTGTTGATC ATCCCGAAGA GGTCAACAAG CTTGCGAAGG
TGAAAGCTCA GGTTTCCGAA GTTAAAGGTG TCATGATGGA GAATATTGAA AAGGTTCTGG ACAGGGGTGA AAAAATAGAG
CTTCTGGTGG ATAAGACAGA GAACCTTCAT AACCAGGCAC AAGATTTCAG GACTTCTGGA ACCAGAATCC GTCGAAAAAT
GTGGCTACAA AACATGAAGA TAAAGCTCAT TGTCCTGGGA ATTCTGATAG CACTGATCCT TGTAATAGTC CTATCCGTGT
GTCGTGGGTT CAACTGTGGG AAATAG

>Vigan.05G103300.01
MGQKSLIYAF VSRGTVILAE YTEFSGNFNS IAFQCLQKLP ATNNKFTYNC DAHTFNYLVD NGYTYCIVAD ESIGRQVPMA
FLERVKDDFV SKYGGGRATT APANSLNKEF GPKLKEHMQY CVDHPEEVNK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE
LLVDKTENLH NQAQDFRTSG TRIRRKMWLQ NMKIKLIVLG ILIALILVIV LSVCRGFNCG K*