GBrowse Details

Vigan.05G103600.01

Basic Information:
Name: Vigan.05G103600.01
Multiple alignment
Variant Information
Position: Chr05:7972723..7978910 (- strand)
Length: 6188
Functional Information:
Description: Similar to Reverse transcriptase-like domain-containing RBR protein. [S4UPN6, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, C6HC-type (IPR002867)
Ribonuclease H-like domain (IPR012337)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, RING-type, conserved site (IPR017907)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.46,10.57,15.54,15.94,24.62,20.18,36.91,14.75
Arabidopsis thaliana homolog: AT4G19670.1
Automatic updates:
Name: NM_001282135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max reverse transcriptase-like domain-containing RBR protein (RTRP3), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354808 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max reverse transcriptase-like domain-containing RBR protein (RTRP4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:7972723..7972993 (- strand)
Length: 271
Type: three_prime_UTR
Position: Chr05:7972994..7973375 (- strand)
Length: 382
Type: CDS
Position: Chr05:7976567..7977327 (- strand)
Length: 761
Type: CDS
Position: Chr05:7978021..7978422 (- strand)
Length: 402
Type: CDS
Position: Chr05:7978423..7978910 (- strand)
Length: 488
Type: five_prime_UTR


>Vigan.05G103600.01
TTTTGATGGG TATGTCAAAT TAATATTAAT AAATAATAGT TAATATTAAT CAATCCGAGT AAGAAGGGTT GTTAAGCCGA
TGATTTTGTC GTCTTTTAGA TTATTAGGGT TTTTATTCTG TTGCAGACAC TGGTTGAGAA TCACTGCTCA AAAGAATAAT
AACACCAAAT TCTAACCAGA TAAGGAGTGT GGAATTTCGA AGCTTCATCT CTTTTACATG ATACCCTTTT CCTTTCTCTC
TCTTCTCTTA TTCTCATTGT TTAGTTACCT ACCGTTCAAT CAAAGTCAAT GGCTACTCTC GCTCCATTTT TTATTTGATT
TCTTTTTGCT CTCACAGTCT TCCCAAAAGG GCTATTTTAT TTTGATGTGA AATTTTGTAA TATGAGAAAA AGAAAGATCT
TTTAGATCGA TTTGTTGATG GGTCGGGCTG GGGTTTTGTT AATTGTTGCA ATGGCAAATT GAAGTTCCGA GGGTGATTTG
TTGGGGAAAT GGGCGATCAG GGTGTTTTAG GTGTTAACGT TGGAAGAGAG GAGGAGGAAG ATGAGTTTTG CAGTTGTTGT
GGAGATGAAG ACGAGGAAGC GTGGAAAGAG ACTGAGGAGG CTGTGGTGGG AGGGTTGAAG GACGAGCTTG ATGAATTTTC
AGTGAAAATG TTCTTCAAAG GGTTGTCAAT GGCTGGGGTT GAAAATCCAA GTTCTGGGTT TTCTGGAATT GGAGTTGTAA
TGGAAAGGTC ACCAGGGCTT CCTACTATAA GGGTGCAGAA AAAACTTGAC TTTTATGCGG AGGAGTCTGT GGTTGACTCT
TTGGCACTCT TGGATGGTTT GCTGGAAGCT GTGCGGAAAA AGATCCGCAG GGTTTATGCT TTCACAGATT CCGAGTTGTT
GCATGATCAG ATAACATTTG GGAAGAAAAT GGACATGCCT CTTTTGATGG CATTGAGAGA AAGGATTCTG GAACTTGCCA
ATAATTTTGA AGATTTTGTT TTAAAGCTTA TACCGTCTAC TGATCTTGAG CAGCCACTGC ATTTGGCCAA AGTAGCTATT
GGGCTAGTCA CTTTCCCCAT AAGTGGTGAG AGATTGCTTA AGAACTGTTC TATTTGCTGT GATGACAAGC CAGTGCTAAT
TATGATTACC CTGAAATGTT CGCACACATT CTGTTCACAT TGCTTGAGGG CCTATGCCGA TGGTAAAGTA CAATCATCTC
AAGTTCCTAT AAAATGCCCT CAACCAGGGT GCAAGTATTG CATCTCTGCA ACTGAGTGCA GGTCTTTTCT TCCATTCACC
TCATTTGAAT CACTGGAGAA AGCTGTTTCC CAAGCCAATA TTGACAATTC AGATAGAATT TATTGCCCAT TTCCAAATTG
TTCTGTTCTC CTTGATTCTC ATGAATGTTT ATCAGCTAGG ACAAGTTCAT CAAGTCAGTC TGACAATTCT TGTATCGAGT
GTCCTGTTTG TAAGAGGTTC ATCTGCGTGG ACTGTAAGGT TCCTTGGCAT TCTTCTATGA ATTGTGTAGA ATTCCAGAAT
CTGCCAGAGG ACGAGAGGGA TGCTTCTGAC ATATCCTTGC ACCGTCTTGC TCAAAATAAG AGGTGGAAGC GTTGTCAACA
ATGTCGTACA GTGATTGAAC TTACTCAAGG CTGTTACCAC ATGACATGCT GGTGTGGTCA TGAGTTCTGC TATTCTTGTG
GTGCGGAATA CCGAGAAGGG CAACAAACAT GCCAATGTGC ATATTGGGAT GAAAGTAACT CAGAAAACTC AGTGGCACAC
TCTCTTCAAG AATCAGAACA ATGGGCATGG GAGACATTCA ACTCTCTCTC CATGATCGTG GATGCATACT CAGACCAGGA
AAGATCACAG CTTGCGCTGA TTCAGAGGTT TCTGGCCGGC GGTTTCAGTC TCAGTGACCA CAATCCTTAC CAGTCTCCTC
CTCGCTGTAC AGATTCCTAT GTAGACCCCA TGAAGGATCT ACATCAACTT CCATGGCTAG AGAGATTTGT GTCTGTGATA
AGTGACAACT ACTATGAAGA TTACATTCAA TGAAAACTGT GATAGATCAT AGACTTTTCT ACCTAATAAG CTCATCAACT
TTCAATCTCA ACTAAAGTTT TGAGAGGTTG CAGAAGGGGA AACTTGGGAG TGAAAACATC TTTGCTTCTT TTTTTACTGG
GAAGAATACA GTGTTAGTCA ATTAACTTTT ATTTTGCTCA CACCCTTTTC CTTCTTATTG AAAAGAATGT TAAACAAACT
ACTTGGTTGG GTTTTATAGT TAAACAAACT TTTTTTAGTC TTCTCACACG ATAGTTGTCT ATTT

>Vigan.05G103600.01
ATGGGCGATC AGGGTGTTTT AGGTGTTAAC GTTGGAAGAG AGGAGGAGGA AGATGAGTTT TGCAGTTGTT GTGGAGATGA
AGACGAGGAA GCGTGGAAAG AGACTGAGGA GGCTGTGGTG GGAGGGTTGA AGGACGAGCT TGATGAATTT TCAGTGAAAA
TGTTCTTCAA AGGGTTGTCA ATGGCTGGGG TTGAAAATCC AAGTTCTGGG TTTTCTGGAA TTGGAGTTGT AATGGAAAGG
TCACCAGGGC TTCCTACTAT AAGGGTGCAG AAAAAACTTG ACTTTTATGC GGAGGAGTCT GTGGTTGACT CTTTGGCACT
CTTGGATGGT TTGCTGGAAG CTGTGCGGAA AAAGATCCGC AGGGTTTATG CTTTCACAGA TTCCGAGTTG TTGCATGATC
AGATAACATT TGGGAAGAAA ATGGACATGC CTCTTTTGAT GGCATTGAGA GAAAGGATTC TGGAACTTGC CAATAATTTT
GAAGATTTTG TTTTAAAGCT TATACCGTCT ACTGATCTTG AGCAGCCACT GCATTTGGCC AAAGTAGCTA TTGGGCTAGT
CACTTTCCCC ATAAGTGGTG AGAGATTGCT TAAGAACTGT TCTATTTGCT GTGATGACAA GCCAGTGCTA ATTATGATTA
CCCTGAAATG TTCGCACACA TTCTGTTCAC ATTGCTTGAG GGCCTATGCC GATGGTAAAG TACAATCATC TCAAGTTCCT
ATAAAATGCC CTCAACCAGG GTGCAAGTAT TGCATCTCTG CAACTGAGTG CAGGTCTTTT CTTCCATTCA CCTCATTTGA
ATCACTGGAG AAAGCTGTTT CCCAAGCCAA TATTGACAAT TCAGATAGAA TTTATTGCCC ATTTCCAAAT TGTTCTGTTC
TCCTTGATTC TCATGAATGT TTATCAGCTA GGACAAGTTC ATCAAGTCAG TCTGACAATT CTTGTATCGA GTGTCCTGTT
TGTAAGAGGT TCATCTGCGT GGACTGTAAG GTTCCTTGGC ATTCTTCTAT GAATTGTGTA GAATTCCAGA ATCTGCCAGA
GGACGAGAGG GATGCTTCTG ACATATCCTT GCACCGTCTT GCTCAAAATA AGAGGTGGAA GCGTTGTCAA CAATGTCGTA
CAGTGATTGA ACTTACTCAA GGCTGTTACC ACATGACATG CTGGTGTGGT CATGAGTTCT GCTATTCTTG TGGTGCGGAA
TACCGAGAAG GGCAACAAAC ATGCCAATGT GCATATTGGG ATGAAAGTAA CTCAGAAAAC TCAGTGGCAC ACTCTCTTCA
AGAATCAGAA CAATGGGCAT GGGAGACATT CAACTCTCTC TCCATGATCG TGGATGCATA CTCAGACCAG GAAAGATCAC
AGCTTGCGCT GATTCAGAGG TTTCTGGCCG GCGGTTTCAG TCTCAGTGAC CACAATCCTT ACCAGTCTCC TCCTCGCTGT
ACAGATTCCT ATGTAGACCC CATGAAGGAT CTACATCAAC TTCCATGGCT AGAGAGATTT GTGTCTGTGA TAAGTGACAA
CTACTATGAA GATTACATTC AATGA

>Vigan.05G103600.01
MGDQGVLGVN VGREEEEDEF CSCCGDEDEE AWKETEEAVV GGLKDELDEF SVKMFFKGLS MAGVENPSSG FSGIGVVMER
SPGLPTIRVQ KKLDFYAEES VVDSLALLDG LLEAVRKKIR RVYAFTDSEL LHDQITFGKK MDMPLLMALR ERILELANNF
EDFVLKLIPS TDLEQPLHLA KVAIGLVTFP ISGERLLKNC SICCDDKPVL IMITLKCSHT FCSHCLRAYA DGKVQSSQVP
IKCPQPGCKY CISATECRSF LPFTSFESLE KAVSQANIDN SDRIYCPFPN CSVLLDSHEC LSARTSSSSQ SDNSCIECPV
CKRFICVDCK VPWHSSMNCV EFQNLPEDER DASDISLHRL AQNKRWKRCQ QCRTVIELTQ GCYHMTCWCG HEFCYSCGAE
YREGQQTCQC AYWDESNSEN SVAHSLQESE QWAWETFNSL SMIVDAYSDQ ERSQLALIQR FLAGGFSLSD HNPYQSPPRC
TDSYVDPMKD LHQLPWLERF VSVISDNYYE DYIQ*