GBrowse Details

Vigan.05G105700.01

Basic Information:
Name: Vigan.05G105700.01
Multiple alignment
Variant Information
Position: Chr05:8143022..8146573 (+ strand)
Length: 3552
Functional Information:
Description: Similar to Accelerated cell death 11 family protein. [B9H9V3, Populus trichocarpa]
GO: Biological Process: glycolipid transport (GO:0046836)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: glycolipid transporter activity (GO:0017089)
Molecular Function: glycolipid binding (GO:0051861)
InterPro: Glycolipid transfer protein domain (IPR014830)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.59,19.17,21.76,14.09,25.89,20.15,9.59,15.61
Arabidopsis thaliana homolog: AT2G34690.1
Automatic updates:
Name: KM399943 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max accelerated cell death 11 mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399963 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris accelerated cell death 11 mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: NM_001248579 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GLTP domain-containing protein (LOC100499750), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248664 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305964 (LOC100305964), mRNA.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:8143022..8143223 (+ strand)
Length: 202
Type: five_prime_UTR
Position: Chr05:8143224..8143418 (+ strand)
Length: 195
Type: CDS
Position: Chr05:8143545..8143717 (+ strand)
Length: 173
Type: CDS
Position: Chr05:8145331..8145476 (+ strand)
Length: 146
Type: CDS
Position: Chr05:8146216..8146322 (+ strand)
Length: 107
Type: CDS
Position: Chr05:8146323..8146573 (+ strand)
Length: 251
Type: three_prime_UTR


>Vigan.05G105700.01
AAATATTAAT GGTATGTTTT AATTTGAAAA ATACAATTTT TAAAAGCATA AACACTAAAA CCAGATTCCA TGTAAAGTTG
GAAAGTTGTC GCTAGAACAA GCCGAAGAAG CAAAGAAGCA AAGGTAGGAA TTGATCAGAG CATAGCAGAG CAGAGCAGAG
CAGAACAGAG GAAGAGTGCG AAGAGAAGGA TCATCATTGT GAATGGCAGA GGGGAGCGGT GACAGAACTC TGCCGAGAAT
CGCAGAGGCA TTCAAGGACC TCGCAAGCGT CGTCACCGAT TCGCTGAACG CGGAGGTGAA GGTTGCTCCC TTCTCCCATG
CCTGCTCTCT CGTTTCCCCT CTCTTTGGTT GCTTGGGTGT TGCCTTCAAG TTCGCCGAGA TGGATTACGT TGCCAAGGTT
CATGATCTGG CAGAGGCGTC GAAGTCTATT CAGAGCTTAC AGTCTCTGAT TGATCTGGAT GTCCGAGGTG GCACTGTCAG
GAAGGGAGGT AGCCACACGC GGAATCTGTT GAGAGTGAAG CGCGGACTTG ACATGGTTAG AGTACTCTTT GAGCAGATTC
TAGTTACCGA GGGTAATTCC CTTAAGGATC CAGCTTCCAA AGCTTATGAT CAGGTGTTTG CACCCCACCA TGGTTGGGCA
ATCAGGAAGG CTGTTGCTGC TGGAATGTAT GTCCTTCCTA CAAAAGAACA ACTTTTGAAG AAGCTCAATG AAGATGAAGC
GTCAGCAAAA GTTCACATGC AAAGTTATGT CACTGCATCA GCACCTCTAA TCCAATACAT CGACAAACTC TTTGTTTCCA
GCGACTTGGG AATAGATTGG TGAATCTTGG ATTGTATTTG AGATTGTACA ATATGATTTA CTGTTAATTA TATGGCATAA
TTCTTGTATT TATGATTACT GAGTATTCAT TTGTTATAGA ATTTGTTTAT ATTGCAATAG ATATTACAGG CTATTGAGAT
GGTACCTGAT ATTGTCTCTG AAAGGTAACG GTGGCTTAAG AGTAAGCTTT TCCTTCAGCT TTGGAGGATT ACTTTGTGAA
TTTTATCATT CCACTTATTT TTTCTTTTGG CGCA

>Vigan.05G105700.01
ATGGCAGAGG GGAGCGGTGA CAGAACTCTG CCGAGAATCG CAGAGGCATT CAAGGACCTC GCAAGCGTCG TCACCGATTC
GCTGAACGCG GAGGTGAAGG TTGCTCCCTT CTCCCATGCC TGCTCTCTCG TTTCCCCTCT CTTTGGTTGC TTGGGTGTTG
CCTTCAAGTT CGCCGAGATG GATTACGTTG CCAAGGTTCA TGATCTGGCA GAGGCGTCGA AGTCTATTCA GAGCTTACAG
TCTCTGATTG ATCTGGATGT CCGAGGTGGC ACTGTCAGGA AGGGAGGTAG CCACACGCGG AATCTGTTGA GAGTGAAGCG
CGGACTTGAC ATGGTTAGAG TACTCTTTGA GCAGATTCTA GTTACCGAGG GTAATTCCCT TAAGGATCCA GCTTCCAAAG
CTTATGATCA GGTGTTTGCA CCCCACCATG GTTGGGCAAT CAGGAAGGCT GTTGCTGCTG GAATGTATGT CCTTCCTACA
AAAGAACAAC TTTTGAAGAA GCTCAATGAA GATGAAGCGT CAGCAAAAGT TCACATGCAA AGTTATGTCA CTGCATCAGC
ACCTCTAATC CAATACATCG ACAAACTCTT TGTTTCCAGC GACTTGGGAA TAGATTGGTG A

>Vigan.05G105700.01
MAEGSGDRTL PRIAEAFKDL ASVVTDSLNA EVKVAPFSHA CSLVSPLFGC LGVAFKFAEM DYVAKVHDLA EASKSIQSLQ
SLIDLDVRGG TVRKGGSHTR NLLRVKRGLD MVRVLFEQIL VTEGNSLKDP ASKAYDQVFA PHHGWAIRKA VAAGMYVLPT
KEQLLKKLNE DEASAKVHMQ SYVTASAPLI QYIDKLFVSS DLGIDW*