VIGGS:GBrowse

Vigan.05G106000.01

Basic Information:

Name:	Vigan.05G106000.01 Multiple alignment Variant Information
Position:	Chr05:8166607..8169312 (+ strand)
Length:	2706

Functional Information:

Description:	Similar to Uncharacterized protein. [O22443, Glycine max]
GO:	Biological Process: response to oxidative stress (GO:0006979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: peroxidase activity (GO:0004601)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Plant peroxidase (IPR000823)
	Haem peroxidase, plant/fungal/bacterial (IPR002016)
	Haem peroxidase (IPR010255)
	Peroxidases heam-ligand binding site (IPR019793)
	Peroxidase, active site (IPR019794)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.00,1.30,0.57,10.59,3.02,44.29,0.25

Automatic updates:

Name:	BT096874 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-21E4 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251386 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxidase (Ep), mRNA.
PubMed ID:	28644760 NCBI(pubmed)
	27292084 NCBI(pubmed)
	9418041 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:8166607..8166683 (+ strand)
Length:	77
Type:	five_prime_UTR

Position:	Chr05:8166684..8166902 (+ strand)
Length:	219
Type:	CDS

Position:	Chr05:8167189..8167380 (+ strand)
Length:	192
Type:	CDS

Position:	Chr05:8168417..8168582 (+ strand)
Length:	166
Type:	CDS

Position:	Chr05:8168688..8169166 (+ strand)
Length:	479
Type:	CDS

Position:	Chr05:8169167..8169312 (+ strand)
Length:	146
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G106000.01
ATCCACCCAA TTCATCTCAT CTATAAATAA AGGATCAATG TGAGAGCATA ATAACTTGAG ATTCAAGAAC AGTCAAAATG
GGTTCCATGC GTGTAGTACT AGTGGCAGTG TTGTGTTCAT TTGCTTTGCA TGCAGGGTTT TCTGTAACTA ATGCTCAGCT
TAGTCCTACG TTCTACAGAA CAACATGTCC AAATATATTC AATATTGTGT TTCAAGTCAT CTTTCAAGCT TCCACCACCG
ATCCCCGAAT TGGGGCCAGC CTTCTCAGGC TTCATTTTCA TGATTGCTTT GTTCAAGGTT GTGATGCATC AGTTTTGTTG
AACAACACTG CTACCATAGA AAGCGAGCAA GATGCAATTC CAAATAACAA TTCAATAAGG GGCTTGGACG TAGTCAATAA
CATCAAGACA GCGGTGGAAA ATAGTTGTCC AGGGACAGTT TCTTGTGCTG ATATTCTTGC CATTGCAGCT GAAGTAGGTT
CTGTTCTGGG AGGAGGTCCA GGATGGCCAG TTCTATTAGG AAGAAGAGAT AGTTTAACAG CAAACAGAAC CCTTGCAAAT
CAAAACCTTC CTGCTCCTTT CTTCAACCTC ACTCAACTTA AAGCAGCATT TGCTGTTCAA GGTCTCAACA CCACTGATTT
AGTTGCACTC TCAGGTGGTC ATACGTTTGG AAGAGCTCAC TGCAGCACAT TCAACAACCG ATTATACAAC TTCAACAACA
CTGGAAACCC TGATCCAACT CTGAATACAA CTTACTTAGC AACACTGCGT CTGATATGCC CCCAGAACGA CACTGGGAAT
AACCTCACCA ATTTGGACCT GACCACACCT GATCAATTTG ATAACAAATA CTACTCCAAT CTACAGCACC TCAATGGCTT
ACTTCAGAGC GACCAGGAAC TCTTCTCTAC TCCTGGTGCT GATACCATTC CCATTGTCAA CAGTTTCAGC AGTAACCAAA
ATGCTTTCTT TGCCAACTTC GTAGCGTCAA TGATAAAAAT GGGAAATATT GGAGTGCTGA CAGGAACTGA TGGAGAAATT
CGCACCCAAT GCAATTTTGT GAATGGAAAC TCGTTTGGAT TAGCTAGTAT GGCGTCCAAA GATCCTAAGG AAAAGAGGGT
TTCTCAATAT TAATAAGTTA ATGGAAAGTG TCAGCTGTAA AAGGCAAATT GGAGGTTGTA AACCTCTTTG CTATAATATT
GAAATAAACC ACAGAAATGT GCATGCAGAC GTGATTTTGC TATGCACCTG TTATGTGTTT ACTTTGAATC TTATTATTG

[show][hide][copy]CDS

>Vigan.05G106000.01
ATGGGTTCCA TGCGTGTAGT ACTAGTGGCA GTGTTGTGTT CATTTGCTTT GCATGCAGGG TTTTCTGTAA CTAATGCTCA
GCTTAGTCCT ACGTTCTACA GAACAACATG TCCAAATATA TTCAATATTG TGTTTCAAGT CATCTTTCAA GCTTCCACCA
CCGATCCCCG AATTGGGGCC AGCCTTCTCA GGCTTCATTT TCATGATTGC TTTGTTCAAG GTTGTGATGC ATCAGTTTTG
TTGAACAACA CTGCTACCAT AGAAAGCGAG CAAGATGCAA TTCCAAATAA CAATTCAATA AGGGGCTTGG ACGTAGTCAA
TAACATCAAG ACAGCGGTGG AAAATAGTTG TCCAGGGACA GTTTCTTGTG CTGATATTCT TGCCATTGCA GCTGAAGTAG
GTTCTGTTCT GGGAGGAGGT CCAGGATGGC CAGTTCTATT AGGAAGAAGA GATAGTTTAA CAGCAAACAG AACCCTTGCA
AATCAAAACC TTCCTGCTCC TTTCTTCAAC CTCACTCAAC TTAAAGCAGC ATTTGCTGTT CAAGGTCTCA ACACCACTGA
TTTAGTTGCA CTCTCAGGTG GTCATACGTT TGGAAGAGCT CACTGCAGCA CATTCAACAA CCGATTATAC AACTTCAACA
ACACTGGAAA CCCTGATCCA ACTCTGAATA CAACTTACTT AGCAACACTG CGTCTGATAT GCCCCCAGAA CGACACTGGG
AATAACCTCA CCAATTTGGA CCTGACCACA CCTGATCAAT TTGATAACAA ATACTACTCC AATCTACAGC ACCTCAATGG
CTTACTTCAG AGCGACCAGG AACTCTTCTC TACTCCTGGT GCTGATACCA TTCCCATTGT CAACAGTTTC AGCAGTAACC
AAAATGCTTT CTTTGCCAAC TTCGTAGCGT CAATGATAAA AATGGGAAAT ATTGGAGTGC TGACAGGAAC TGATGGAGAA
ATTCGCACCC AATGCAATTT TGTGAATGGA AACTCGTTTG GATTAGCTAG TATGGCGTCC AAAGATCCTA AGGAAAAGAG
GGTTTCTCAA TATTAA

[show][hide][copy]PROTEIN

>Vigan.05G106000.01
MGSMRVVLVA VLCSFALHAG FSVTNAQLSP TFYRTTCPNI FNIVFQVIFQ ASTTDPRIGA SLLRLHFHDC FVQGCDASVL
LNNTATIESE QDAIPNNNSI RGLDVVNNIK TAVENSCPGT VSCADILAIA AEVGSVLGGG PGWPVLLGRR DSLTANRTLA
NQNLPAPFFN LTQLKAAFAV QGLNTTDLVA LSGGHTFGRA HCSTFNNRLY NFNNTGNPDP TLNTTYLATL RLICPQNDTG
NNLTNLDLTT PDQFDNKYYS NLQHLNGLLQ SDQELFSTPG ADTIPIVNSF SSNQNAFFAN FVASMIKMGN IGVLTGTDGE
IRTQCNFVNG NSFGLASMAS KDPKEKRVSQ Y*