VIGGS:GBrowse

Vigan.05G106300.01

Basic Information:

Name:	Vigan.05G106300.01 Multiple alignment Variant Information
Position:	Chr05:8191199..8194381 (+ strand)
Length:	3183

Functional Information:

Description:	Similar to Peroxidase. [O23961, Glycine max]
GO:	Biological Process: response to oxidative stress (GO:0006979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: peroxidase activity (GO:0004601)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Plant peroxidase (IPR000823)
	Haem peroxidase, plant/fungal/bacterial (IPR002016)
	Haem peroxidase (IPR010255)
	Peroxidases heam-ligand binding site (IPR019793)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.33,0.97,63.04,18.38,178.24,17.86,167.18,28.49

Automatic updates:

Name:	NM_001250448 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxidase (LOC547499), mRNA.
PubMed ID:	9856343 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001354716 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxidase 15-like protein (LOC100804829), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:8191199..8191387 (+ strand)
Length:	189
Type:	five_prime_UTR

Position:	Chr05:8191388..8191609 (+ strand)
Length:	222
Type:	CDS

Position:	Chr05:8192802..8192993 (+ strand)
Length:	192
Type:	CDS

Position:	Chr05:8193249..8193414 (+ strand)
Length:	166
Type:	CDS

Position:	Chr05:8193524..8194002 (+ strand)
Length:	479
Type:	CDS

Position:	Chr05:8194003..8194381 (+ strand)
Length:	379
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G106300.01
ATAAAAGTAA ATAAGTAGGT AGGAAAGAGT AACATAGGGA AAGTTAAGAA TGAGTGTTTC AAATATCAGC TAGCCGACGC
CATGAATATC CACCATGGCC ATTTGTTCCT ATAAATAAAG GCTTCGTATC TGCCTAACTT GCACGCCGAC AAACGCAGAG
GTAAAGACAA CAAGTTAAGG AAAGGAAAAA TGAGGGGTTT TCATGGAACA CTGACAGCTC TGTGTTGTGT AGTGGTTGTG
CTTGGAGTGT TTCCACTCTC TCTAGATGCA CAACTTGATC CTTCCTTTTA CAGAGACACA TGTCCTAGGG TTCACTCCAT
TGTTCGTGAA GTCGTCAGGA ACGTTTCAAA GAAGGACCCT CGCATGCTCG CCAGTCTCAT TAGACTTCAC TTTCATGACT
GCTTTGTTCA AGGATGTGAT GCCTCGGTTT TATTGAACAA CACTGCTACA ATAGTGAGTG AGCAGCAGGC TCTGCCAAAC
AACAACTCGT TAAGAGGTTT GGATGTTGTG AACGATATCA AGACAGCAGT GGAAAATGCT TGCCCCGGCG TGGTTTCTTG
TGCAGACATT CTTACCCTTG CATCTGAAAT ATCTTCAGTT CTGGGAGGTG GTCCTGACTG GAAAGTTCCA TTGGGAAGAA
GAGATAGTTT AACAGCAAAC AGAACACTTG CCAATGAAAA CCTTCCAGCT CCTTTCTTCA ACCTCACCCT ACTGAAAGCT
GCATTTGCTA AACAAGGCCT TGACACTACT GATCTAGTTG CACTATCAGG TGCTCATACA TTTGGCAGAG CTCACTGTTC
TTTCATTCTT GACCGATTGT ACAACTTCAG TGGTACTGGA AGACCCGACC CAACTCTGGA CACAACTTAT TTACAACAAT
TACGGTCACA GTGCCCCCAA GGTGGACCTA ACAACCTTGT AAATTTTGAT CCAACTACTC CTGACAAAAT CGACAAGGCC
TACTACTCCA ATCTTGTGGT TAAAAAGGGT TTGCTTCAGA GTGATCAAGA GTTGTTCTCA ACGCCCGGCG CTGATACCAT
TCCCATTGTC ACCAGGTTCA ATAGCGATCA AAAGGTTTTC TTTGACGCAT TTGAGGCTTC GATGATTAAG ATGGGTAATA
TTCGTGTGCT CACTGGGAAG CAGGGAGAAA TCAGAAAGCA CTGTAATTTT GTTAACAAGA AATCTGTTGA ACTTGATACC
GTGGTCTCTG AGGAATCTTC TGCAGAGGGT CTGGTTAGCT CTTTCTAAAT GATTTGAGGC CATCAATAAG CTAGTTTTTA
GCCACACTCA TGCCATGTGC CTGCCACTTG TTATGTTGAT GTGTGTTAGA TTTTCTTTGT TGTAGTTTCA ATCGTGTATT
TTAGTTTTGG AAAGAGATCC TGAAGAAGCT AAAATATGAT CTATCATTCG AGGATAGAAG TTGAGCCGAA CATTTAAACT
ATAATTGACC GTTGTTTGTA TTTATTGGCT TCCATCTGGC CAATGGATCA ACTTGCCATT TGAAGAATGA TAGTTTAAAT
GAAATCTTCA GAAGAGGACC CACTCTTGTT CTTACACATG CGAAATGATA TGGATCTATG GTTTTGAATT TTCTCGAAAA
AAGAAAAAAA AAACATTTCA CGTTTAA

[show][hide][copy]CDS

>Vigan.05G106300.01
ATGAGGGGTT TTCATGGAAC ACTGACAGCT CTGTGTTGTG TAGTGGTTGT GCTTGGAGTG TTTCCACTCT CTCTAGATGC
ACAACTTGAT CCTTCCTTTT ACAGAGACAC ATGTCCTAGG GTTCACTCCA TTGTTCGTGA AGTCGTCAGG AACGTTTCAA
AGAAGGACCC TCGCATGCTC GCCAGTCTCA TTAGACTTCA CTTTCATGAC TGCTTTGTTC AAGGATGTGA TGCCTCGGTT
TTATTGAACA ACACTGCTAC AATAGTGAGT GAGCAGCAGG CTCTGCCAAA CAACAACTCG TTAAGAGGTT TGGATGTTGT
GAACGATATC AAGACAGCAG TGGAAAATGC TTGCCCCGGC GTGGTTTCTT GTGCAGACAT TCTTACCCTT GCATCTGAAA
TATCTTCAGT TCTGGGAGGT GGTCCTGACT GGAAAGTTCC ATTGGGAAGA AGAGATAGTT TAACAGCAAA CAGAACACTT
GCCAATGAAA ACCTTCCAGC TCCTTTCTTC AACCTCACCC TACTGAAAGC TGCATTTGCT AAACAAGGCC TTGACACTAC
TGATCTAGTT GCACTATCAG GTGCTCATAC ATTTGGCAGA GCTCACTGTT CTTTCATTCT TGACCGATTG TACAACTTCA
GTGGTACTGG AAGACCCGAC CCAACTCTGG ACACAACTTA TTTACAACAA TTACGGTCAC AGTGCCCCCA AGGTGGACCT
AACAACCTTG TAAATTTTGA TCCAACTACT CCTGACAAAA TCGACAAGGC CTACTACTCC AATCTTGTGG TTAAAAAGGG
TTTGCTTCAG AGTGATCAAG AGTTGTTCTC AACGCCCGGC GCTGATACCA TTCCCATTGT CACCAGGTTC AATAGCGATC
AAAAGGTTTT CTTTGACGCA TTTGAGGCTT CGATGATTAA GATGGGTAAT ATTCGTGTGC TCACTGGGAA GCAGGGAGAA
ATCAGAAAGC ACTGTAATTT TGTTAACAAG AAATCTGTTG AACTTGATAC CGTGGTCTCT GAGGAATCTT CTGCAGAGGG
TCTGGTTAGC TCTTTCTAA

[show][hide][copy]PROTEIN

>Vigan.05G106300.01
MRGFHGTLTA LCCVVVVLGV FPLSLDAQLD PSFYRDTCPR VHSIVREVVR NVSKKDPRML ASLIRLHFHD CFVQGCDASV
LLNNTATIVS EQQALPNNNS LRGLDVVNDI KTAVENACPG VVSCADILTL ASEISSVLGG GPDWKVPLGR RDSLTANRTL
ANENLPAPFF NLTLLKAAFA KQGLDTTDLV ALSGAHTFGR AHCSFILDRL YNFSGTGRPD PTLDTTYLQQ LRSQCPQGGP
NNLVNFDPTT PDKIDKAYYS NLVVKKGLLQ SDQELFSTPG ADTIPIVTRF NSDQKVFFDA FEASMIKMGN IRVLTGKQGE
IRKHCNFVNK KSVELDTVVS EESSAEGLVS SF*