GBrowse Details

Vigan.05G108000.01

Basic Information:
Name: Vigan.05G108000.01
Multiple alignment
Variant Information
Position: Chr05:8391194..8401023 (+ strand)
Length: 9830
Functional Information:
Description: Similar to Obg-like ATPase 1. [V7BSC2, Phaseolus vulgaris]
GO: Molecular Function: GTP binding (GO:0005525)
InterPro: Ribosome-binding ATPase YchF/Obg-like ATPase 1 (IPR004396)
GTP binding domain (IPR006073)
Beta-grasp domain (IPR012675)
TGS-like (IPR012676)
Domain of unknown function DUF933 (IPR013029)
TGS-like domain (IPR023192)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.42,53.37,47.79,44.77,59.08,60.65,49.94,41.10
Arabidopsis thaliana homolog: AT1G30580.1
Automatic updates:
Name: NM_001255591 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max obg-like ATPase 1-like (LOC100793501), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:8391194..8391293 (+ strand)
Length: 100
Type: five_prime_UTR
Position: Chr05:8391294..8391380 (+ strand)
Length: 87
Type: CDS
Position: Chr05:8391698..8391865 (+ strand)
Length: 168
Type: CDS
Position: Chr05:8392081..8392204 (+ strand)
Length: 124
Type: CDS
Position: Chr05:8392316..8392407 (+ strand)
Length: 92
Type: CDS
Position: Chr05:8392740..8392838 (+ strand)
Length: 99
Type: CDS
Position: Chr05:8393680..8393793 (+ strand)
Length: 114
Type: CDS
Position: Chr05:8394812..8394876 (+ strand)
Length: 65
Type: CDS
Position: Chr05:8396305..8396421 (+ strand)
Length: 117
Type: CDS
Position: Chr05:8396814..8396889 (+ strand)
Length: 76
Type: CDS
Position: Chr05:8399164..8399256 (+ strand)
Length: 93
Type: CDS
Position: Chr05:8400040..8400090 (+ strand)
Length: 51
Type: CDS
Position: Chr05:8400508..8400606 (+ strand)
Length: 99
Type: CDS
Position: Chr05:8400607..8401023 (+ strand)
Length: 417
Type: three_prime_UTR


>Vigan.05G108000.01
CTAGTACAAA ACCCTACAAA CCACGAACTG AGATTCGAAG ACGCTCTTCT TGTTCTTCAG TTCATCATTG GAATCGAACC
AAAGCCCTTT GCCCCTTAAA ATGCCTCCCA AATCTGCCAA ATCCAAGGAA GCCCCAGCTG AGCGACCCAT CCTCGGTCGA
TTCTCTTCTC ACCTCAAAAT TGGCATTGTT GGCTTGCCAA ATGTTGGGAA ATCTACTCTT TTTAATACTC TCACCAAGTT
GGCAATACCT GCTGAGAACT TCCCCTTTTG TACCATTGAG CCTAATGAGG CGCGGGTCAA TATACCCGAC GAACGGTTTG
AGTGGCTTTG CCAATTATAC AAGCCAAAAA GTGAGGTCTC AGCTTTCTTA GAAATCCATG ACATAGCTGG ATTGGTCCGA
GGTGCTCATC AGGGGCAAGG ATTGGGGAAT AGTTTTTTAT CTCACATTCG TGCTGTTGAT GGAATTTTCC ATGTTTTACG
TGCATTTGAG GATCCGGACA TTATTCATGT AGATGATACT GTTGACCCAG TTAGGGATTT GGAGATCATT ACTGAAGAAT
TGAGGCTGAA GGATGTTGAA TTCATGGAAA GAAAGATAGA AGATGTTGAG AAAAGCATGA AGAGGAGCAA TGACAAACAG
TTAAAAATTG AACTTGAATG TTGTCAAAGG GTGAAGGCAT TGCTTCAGGA AGGAAAAGAT ATACGTCTAG GTGAATGGAA
GGCTGCTGAT ATTGAGATTT TGAATTCCTT TCAGTTACTT ACTGCCAAGC CTGTTGTATA CTTGGTTAAT ATGACTGAAA
AGGATTACCA AAGAAAAAAG AACAAGTTTC TGCCCAAAAT TCATGCTTGG GTCCAGGAGC ATGGTGGTGA GCAAATAATT
CCTTTCAGCT GTGCTTTCGA GAGGAATTTT TCAGATCTGC CACCAGATGA AGCAGCTAAG TATTGTGAGG AGAACAAAAT
TCAAAGTGCT CTTCCCAAAA TAATAAAGAC TGGGTTTTCC GCTATTAATC TCATTTATTT TTTCACAGCT GGACCTGATG
AGGTTAAGTG TTGGCAAATT AGACGCCAAA CAAAAGCTCC TCAAGCTGCA GGGACTATCC ATACTGATTT TGAAAGGGGA
TTTATTTGTG CTGAGGTGAT GAAGTTTGAG GATCTTAAGG AACTCGGTAG TGAGTCAGCT GTGAAGGCTG CTGGAAAGTA
TAAACAGGAG GGTAAAACGT ATGTGGTCCA AGATGGGGAC ATCATATTCT TCAAGTTTAA CGTTTCTGGT GGAGGGAAGA
AGTAAAACCA CAGATTCCTT TCCATGGAGT TTGTGTTTTA TGATAGATGT CATCCATGTT GCACATTTTT TACAAGTTTT
CTTATAATGT AATTTTGAAC CCACTTCCAA ATTATTTACT TATTTATATT TAGGCTTAAT ATTTCTAGTG GATTTTGACT
TCTCACCCGT TTTCATAATT TATTTATGCT GTGCTACTAC GCCTTATAGC AGTTTTGAAT ACAAGAGTGT TGATGAGTTT
ATATTATTAT TATTGTATGC TGGGTCAATT AATTTAATAT TAGAGAGGTA TATTCTGGTG AATTCATTTA AACTAGGAAT
GGGCCGAATT TCATTTAGTT GGAAACGCGT TCAATTCAAT GTAGAACTTT GTGTTTGGAC ATATTAATTA ACGTGATTTT
TCACAAATAT TTACATCAAA CG

>Vigan.05G108000.01
ATGCCTCCCA AATCTGCCAA ATCCAAGGAA GCCCCAGCTG AGCGACCCAT CCTCGGTCGA TTCTCTTCTC ACCTCAAAAT
TGGCATTGTT GGCTTGCCAA ATGTTGGGAA ATCTACTCTT TTTAATACTC TCACCAAGTT GGCAATACCT GCTGAGAACT
TCCCCTTTTG TACCATTGAG CCTAATGAGG CGCGGGTCAA TATACCCGAC GAACGGTTTG AGTGGCTTTG CCAATTATAC
AAGCCAAAAA GTGAGGTCTC AGCTTTCTTA GAAATCCATG ACATAGCTGG ATTGGTCCGA GGTGCTCATC AGGGGCAAGG
ATTGGGGAAT AGTTTTTTAT CTCACATTCG TGCTGTTGAT GGAATTTTCC ATGTTTTACG TGCATTTGAG GATCCGGACA
TTATTCATGT AGATGATACT GTTGACCCAG TTAGGGATTT GGAGATCATT ACTGAAGAAT TGAGGCTGAA GGATGTTGAA
TTCATGGAAA GAAAGATAGA AGATGTTGAG AAAAGCATGA AGAGGAGCAA TGACAAACAG TTAAAAATTG AACTTGAATG
TTGTCAAAGG GTGAAGGCAT TGCTTCAGGA AGGAAAAGAT ATACGTCTAG GTGAATGGAA GGCTGCTGAT ATTGAGATTT
TGAATTCCTT TCAGTTACTT ACTGCCAAGC CTGTTGTATA CTTGGTTAAT ATGACTGAAA AGGATTACCA AAGAAAAAAG
AACAAGTTTC TGCCCAAAAT TCATGCTTGG GTCCAGGAGC ATGGTGGTGA GCAAATAATT CCTTTCAGCT GTGCTTTCGA
GAGGAATTTT TCAGATCTGC CACCAGATGA AGCAGCTAAG TATTGTGAGG AGAACAAAAT TCAAAGTGCT CTTCCCAAAA
TAATAAAGAC TGGGTTTTCC GCTATTAATC TCATTTATTT TTTCACAGCT GGACCTGATG AGGTTAAGTG TTGGCAAATT
AGACGCCAAA CAAAAGCTCC TCAAGCTGCA GGGACTATCC ATACTGATTT TGAAAGGGGA TTTATTTGTG CTGAGGTGAT
GAAGTTTGAG GATCTTAAGG AACTCGGTAG TGAGTCAGCT GTGAAGGCTG CTGGAAAGTA TAAACAGGAG GGTAAAACGT
ATGTGGTCCA AGATGGGGAC ATCATATTCT TCAAGTTTAA CGTTTCTGGT GGAGGGAAGA AGTAA

>Vigan.05G108000.01
MPPKSAKSKE APAERPILGR FSSHLKIGIV GLPNVGKSTL FNTLTKLAIP AENFPFCTIE PNEARVNIPD ERFEWLCQLY
KPKSEVSAFL EIHDIAGLVR GAHQGQGLGN SFLSHIRAVD GIFHVLRAFE DPDIIHVDDT VDPVRDLEII TEELRLKDVE
FMERKIEDVE KSMKRSNDKQ LKIELECCQR VKALLQEGKD IRLGEWKAAD IEILNSFQLL TAKPVVYLVN MTEKDYQRKK
NKFLPKIHAW VQEHGGEQII PFSCAFERNF SDLPPDEAAK YCEENKIQSA LPKIIKTGFS AINLIYFFTA GPDEVKCWQI
RRQTKAPQAA GTIHTDFERG FICAEVMKFE DLKELGSESA VKAAGKYKQE GKTYVVQDGD IIFFKFNVSG GGKK*