GBrowse Details

Vigan.05G109000.01

Basic Information:
Name: Vigan.05G109000.01
Multiple alignment
Variant Information
Position: Chr05:8507076..8512160 (- strand)
Length: 5085
Functional Information:
Description: Similar to PMP, putative. [B9RWJ6, Ricinus communis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:96.20,65.03,96.89,85.94,95.21,101.32,145.82,85.90
Arabidopsis thaliana homolog: AT3G24160.1
Automatic updates:
Name: NM_001253086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100817223 (LOC100817223), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:8507076..8507511 (- strand)
Length: 436
Type: three_prime_UTR
Position: Chr05:8507512..8507580 (- strand)
Length: 69
Type: CDS
Position: Chr05:8507996..8508201 (- strand)
Length: 206
Type: CDS
Position: Chr05:8508423..8508528 (- strand)
Length: 106
Type: CDS
Position: Chr05:8510139..8510276 (- strand)
Length: 138
Type: CDS
Position: Chr05:8510364..8510471 (- strand)
Length: 108
Type: CDS
Position: Chr05:8510568..8510641 (- strand)
Length: 74
Type: CDS
Position: Chr05:8510759..8510845 (- strand)
Length: 87
Type: CDS
Position: Chr05:8510936..8511011 (- strand)
Length: 76
Type: CDS
Position: Chr05:8511114..8511209 (- strand)
Length: 96
Type: CDS
Position: Chr05:8511797..8511874 (- strand)
Length: 78
Type: CDS
Position: Chr05:8511989..8512057 (- strand)
Length: 69
Type: CDS
Position: Chr05:8512058..8512160 (- strand)
Length: 103
Type: five_prime_UTR


>Vigan.05G109000.01
AAAGCCCAAA CGAGCCTGTG CTATTGGCTG TTTCATTATT GCAAGAAACA ACAAGCACGT TGCTGAAGTA GAACCTCTGG
ATCTCTCTAT CTTTCTCTCT GCGATGGAGT TTCGCGTTTC CGTTATTTGG AGCGTCGTCC TCGTTGTCTC CTTATTCTGT
CCTCAAATCA GGGGTGAGGC TTCTGGTTCA CTCACCTTCG TTGATAGTTC CAGTCATCAA TTCCTTCGCG CCAGATCATC
AAATGATGAG CAACCTTCAT TCTTGCTTCG GGATGTTAGC GCTCTTGTGT CAGTTTTGCT TGGTTTTGCT CCTCCTTCCA
CCCTTTCAGC TGCCAGCTCA TCCAAGTTGA ACAAGGTTCT GAGTCCTAAC CCATTCAAGA GGCCTCGTGC TGTATTTTTG
CTGGAAGTGA ATGGAATCAA TGGTCTTGGG AAAATTGCTC AGGATAGTCC AATGTTCAGC AATTCATTTT GGAGTATAAA
TTCAGATAAA GTTGACATTG AACTCCCAGA TGAAAGCGAT GTTTCTGTTG TTTCTTTGGA TGATCAACTG GAACTCTGGA
CTGACAAAGA AATCAGAGAT TTTTCATCTT TGATAGATGG ATCATATGTT CCCGATGCCT TTGTGCCATT AAATGGAGTG
CTTTCCATTC CATTGGCAAA TGGTGCCTCA GTGAATTTCC GTATGTCAGA GAAAGCTGAA AGGATGTTTG TTTTTGGTCT
TATGTCTCTT ATGCATGACG TAAAAAGAGC AATTCAACTG CATGATGATT TATCACAGAC TACAAAGAGT CCAGCCGAGC
TGTTAATGGG ATGCTTCAAT GGCATTAAGG TTTTGCAAGA GCAATATGAG ACTGAAAGTA TTGCTGAGCA TGGAATTGAA
GTGCTATATG CAACTTTGTC AAAGATAGTT AGTTCATTGC AGGAAGCATA TAAAGGTCAA ATTGTTGGAA TAATCTACTG
TCATGTGGCT ACTACAGAGG AGTTGGAAAA GAAGTTTGAT GTAATCTTTA CTCCTCACCA CACTGCTCGA TGGTTGGCCG
AAACAAGTGC ACTCAATGCA ACGTTGCCAG AAGTGGTGTT GGTTAGGAGA ACCCTTGCTT GGGTAACAGG AATTCTATTG
CTCGTTTCAA CCCTTATGGG GATATGCTAC CTCTTGAATA TGCCGCTCAC AAGGGACACG CTTCTATATT CTAATGTCAA
GCTTGATTAG GCATGGGTGC GCGAACCAAG ATCAATCTTT TCAACCAACG AAAGGAGAAC CCGGCTGCCG TTGAACCTTG
TAATTGGGGG TCTTTTTCTT GATGCCTCTA ATCTGTGTGC GAGATTATAT TAATGTTAAA CCATTAGTTA CTTGTGTTTA
ATGGACCACC GGTGTAGCAA ATTATATTCA TGAATCATTG GAAACTCGTC CAATCAGTCA GGATTTGGGT CTTAGAGAAT
AGGGGATTAT TGTATTATTG TTTGAATGTG AAGCACTGTA CCCCGTGTTT AGTCAGGGCG TAGATAGTCA TAGATGTGCG
ATTATTCCAA CCATTACAAT AATGGGTGTA ACCTGTGATT GACATTTTGG TCCAAATAAT TTCAATTTTA TTGTAAAATA
ATGAATTTTC AAAGAGACTT GTTTATCTTC TAGTTTCTAA ATAACA

>Vigan.05G109000.01
ATGGAGTTTC GCGTTTCCGT TATTTGGAGC GTCGTCCTCG TTGTCTCCTT ATTCTGTCCT CAAATCAGGG GTGAGGCTTC
TGGTTCACTC ACCTTCGTTG ATAGTTCCAG TCATCAATTC CTTCGCGCCA GATCATCAAA TGATGAGCAA CCTTCATTCT
TGCTTCGGGA TGTTAGCGCT CTTGTGTCAG TTTTGCTTGG TTTTGCTCCT CCTTCCACCC TTTCAGCTGC CAGCTCATCC
AAGTTGAACA AGGTTCTGAG TCCTAACCCA TTCAAGAGGC CTCGTGCTGT ATTTTTGCTG GAAGTGAATG GAATCAATGG
TCTTGGGAAA ATTGCTCAGG ATAGTCCAAT GTTCAGCAAT TCATTTTGGA GTATAAATTC AGATAAAGTT GACATTGAAC
TCCCAGATGA AAGCGATGTT TCTGTTGTTT CTTTGGATGA TCAACTGGAA CTCTGGACTG ACAAAGAAAT CAGAGATTTT
TCATCTTTGA TAGATGGATC ATATGTTCCC GATGCCTTTG TGCCATTAAA TGGAGTGCTT TCCATTCCAT TGGCAAATGG
TGCCTCAGTG AATTTCCGTA TGTCAGAGAA AGCTGAAAGG ATGTTTGTTT TTGGTCTTAT GTCTCTTATG CATGACGTAA
AAAGAGCAAT TCAACTGCAT GATGATTTAT CACAGACTAC AAAGAGTCCA GCCGAGCTGT TAATGGGATG CTTCAATGGC
ATTAAGGTTT TGCAAGAGCA ATATGAGACT GAAAGTATTG CTGAGCATGG AATTGAAGTG CTATATGCAA CTTTGTCAAA
GATAGTTAGT TCATTGCAGG AAGCATATAA AGGTCAAATT GTTGGAATAA TCTACTGTCA TGTGGCTACT ACAGAGGAGT
TGGAAAAGAA GTTTGATGTA ATCTTTACTC CTCACCACAC TGCTCGATGG TTGGCCGAAA CAAGTGCACT CAATGCAACG
TTGCCAGAAG TGGTGTTGGT TAGGAGAACC CTTGCTTGGG TAACAGGAAT TCTATTGCTC GTTTCAACCC TTATGGGGAT
ATGCTACCTC TTGAATATGC CGCTCACAAG GGACACGCTT CTATATTCTA ATGTCAAGCT TGATTAG

>Vigan.05G109000.01
MEFRVSVIWS VVLVVSLFCP QIRGEASGSL TFVDSSSHQF LRARSSNDEQ PSFLLRDVSA LVSVLLGFAP PSTLSAASSS
KLNKVLSPNP FKRPRAVFLL EVNGINGLGK IAQDSPMFSN SFWSINSDKV DIELPDESDV SVVSLDDQLE LWTDKEIRDF
SSLIDGSYVP DAFVPLNGVL SIPLANGASV NFRMSEKAER MFVFGLMSLM HDVKRAIQLH DDLSQTTKSP AELLMGCFNG
IKVLQEQYET ESIAEHGIEV LYATLSKIVS SLQEAYKGQI VGIIYCHVAT TEELEKKFDV IFTPHHTARW LAETSALNAT
LPEVVLVRRT LAWVTGILLL VSTLMGICYL LNMPLTRDTL LYSNVKLD*