VIGGS:GBrowse

Vigan.05G109400.01

Basic Information:

Name:	Vigan.05G109400.01 Multiple alignment Variant Information
Position:	Chr05:8576295..8579664 (- strand)
Length:	3370

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MG61, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: microtubule-based process (GO:0007017)
	Biological Process: protein polymerization (GO:0051258)
	Cellular Component: microtubule (GO:0005874)
	Cellular Component: protein complex (GO:0043234)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: structural constituent of cytoskeleton (GO:0005200)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Tubulin (IPR000217)
	Beta tubulin (IPR002453)
	Tubulin/FtsZ, GTPase domain (IPR003008)
	Tubulin/FtsZ, C-terminal (IPR008280)
	Beta tubulin, autoregulation binding site (IPR013838)
	Tubulin, conserved site (IPR017975)
	Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
	Tubulin, C-terminal (IPR023123)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:37.35,32.90,119.81,92.48,184.28,219.19,123.09,121.64
Arabidopsis thaliana homolog:	AT1G20010.1, AT1G75780.1, AT2G29550.1, AT4G20890.1, AT5G12250.1, AT5G23860.1, AT5G44340.1, AT5G62690.1, AT5G62700.1

Automatic updates:

Name:	NM_001360303 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin beta chain (TUBB), mRNA.
PubMed ID:	1912487 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:8576295..8577073 (- strand)
Length:	779
Type:	three_prime_UTR

Position:	Chr05:8577074..8577750 (- strand)
Length:	677
Type:	CDS

Position:	Chr05:8578598..8578867 (- strand)
Length:	270
Type:	CDS

Position:	Chr05:8578960..8579353 (- strand)
Length:	394
Type:	CDS

Position:	Chr05:8579354..8579664 (- strand)
Length:	311
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G109400.01
AAGAAAGTAA AAGGGTAACA TTCTCTGGTG TGGCATCAAC GGTGAGAGAT CAAATTCCAG AACAGTGTCG TTTGGTTTGG
TTCCTTATCA CAATTCACAG CTCAGTACAG CAAAGCACTA TGATTTGAAA AAATCCATTC TATTCCGAAA AAACCCTCAG
GACATGACAC AATTACAAAA CAAACCCGTC CTTCAAGTTA TCCATTCCAT TGACCCCTCT CATTCATTTC CATTTCCTTC
GAAACCAATC TCTAGTTTCT TCAAACCCTA ATTTCCTTTC TCTCACATTC TTGAACACTC GCCAGTCGAA AATGAGAGAA
ATCTTGCACA TCCAGGGAGG CCAATGCGGG AACCAGATCG GAGCCAAGTT CTGGGAGGTC ATCTGCGATG AGCACGGCAT
CGACCACACC GGAAAGTACA GCGGCGACTC CGAGCTCCAA CTCGAACGCA TCAATGTCTA CTATAATGAA GCCAGCGGAG
GAAGGTACGT TCCACGCGCC GTCCTCATGG ATCTTGAACC CGGCACCATG GATTCCGTCA GATCCGGCCC CTTCGGCCAG
ATCTTCCGTC CCGACAACTT TGTCTTCGGC CAGTCCGGCG CCGGCAACAA CTGGGCCAAA GGCCACTACA CTGAAGGGGC
CGAACTCATC GACTCAGTTC TCGACGTCGT TCGCAAGGAA GCCGAAAATT GCGATTGCTT GCAAGGGTTT CAGGTGTGCC
ATTCTCTTGG TGGTGGAACG GGTTCCGGCA TGGGGACGCT TCTGATCTCA AAGATTCGCG AGGAGTATCC AGATCGGATG
ATGTTGACGT TTTCGGTGTT TCCTTCTCCT AAGGTTTCTG ACACCGTTGT GGAGCCTTAC AATGCTACGC TCTCTGTTCA
CCAACTAGTA GAGAACGCTG ATGAGTGTAT GGTTCTGGAC AATGAGGCTC TCTACGACAT TTGTTTCAGG ACCCTCAAGC
TCGCTACACC CACCTTTGGT GACCTTAACC ACCTGATTTC TGCCACCATG AGTGGAGTTA CTTGCTGTCT ACGTTTCCCT
GGGCAACTGA ACTCAGATCT TCGCAAGCTT GCTGTTAATC TTATCCCATT CCCCCGGCTC CATTTCTTTA TGGTTGGGTT
TGCGCCCTTG ACATCTAGAG GATCCCAGCA GTACCGTGCT TTGACTGTTC CTGAATTAAC ACAGCAAATG TGGGATGCTA
AGAACATGAT GTGTGCTGCT GATCCTCGTC ATGGTCGTTA TTTGACTGCA TCAGCAATGT TCCGTGGTAA GATGAGCACA
AAGGAGGTAG ACGAGCAAAT GATCAATGTG CAGAACAAGA ATTCTTCATA TTTCGTTGAG TGGATACCTA ATAATGTGAA
GTCCAGCGTG TGTGATATCC CGCCTAAGGG TCTCAAAATG GCTTCCACTT TCATTGGCAA TTCAACTTCA ATCCAGGAGA
TGTTCAGGAG AGTTAGTGAG CAGTTCACGG CTATGTTCAG GCGTAAGGCT TTCTTGCATT GGTACACTGG AGAAGGAATG
GACGAAATGG AGTTCACTGA GGCTGAGAGT AACATGAACG ATCTTGTTGC GGAGTATCAG CAGTACCAGG ATGCTACTGC
CGATGACGAA GAGTACGACG AGGAGGAGGA AGAAGAGGAA ATTCCAGCTT AAGACTCTTC CTTCATTTAT CAAAATTGTT
TCAAATATCA ATGTGATTGG CTTTGAACGA GTGGTGTAAG TTTTAATTGT GATGCAGTCA AATTAGATTG ACTTCTTAAT
GTGTATGCTT ATTATTGATT GTTGACATTG TATAAACTGG GTTCTCTTGA CAATGTTTCT GTTTTTTGAG AGATCAAGTC
TTGGATGTTT GTAATAGTTA GTAACATGTT TTTTCTCTCT TCACCTCTCC TGTTTTGATA TCTTTTGATT ATAGTAAGTT
GCCTATGATC TAAGTTTTCG GTTTTAATTG ACATGCTGTT CCATACGTGC TTGATTTATC CTGGGTGGAG ACAGACTAAG
GATTTGTCAT AATGAAATTG GGGGCATGAC AAGATACGAT GGTTTAATTT ATTTTGACAT TAATGTTGTA TGATTATTGG
TAAGATGCTA TTTTTGATGT GATTAAAATG TCAATACAAC TGTATGTAGT TAATGCTTGT TTCGTAAGAA TAGAAAGAAG
GCGGTGATTA TAAATCTGAT GATGATATTG GTATTGCTAT TCACGAAACT CTGGAAGAAA TAAAAAGAAA ATGGCGGTAA
AGAAATAAAA AAGGTGAAGG AAAGGAATAA GCAGGAAAAC TGTGATTGTA TGATTGCGGC ATCAGATGAT GAAGCCATTA
TTCAGGTGCA CGGGACCGAG CCGGTGACAA ATCAGCCTTC TTGAAAGTTA AGTCTCTGAA ATTCTATGGA TGTAGTATTA
ATAATATTCT TGTGTCACAC TTAATCTTTT T

[show][hide][copy]CDS

>Vigan.05G109400.01
ATGAGAGAAA TCTTGCACAT CCAGGGAGGC CAATGCGGGA ACCAGATCGG AGCCAAGTTC TGGGAGGTCA TCTGCGATGA
GCACGGCATC GACCACACCG GAAAGTACAG CGGCGACTCC GAGCTCCAAC TCGAACGCAT CAATGTCTAC TATAATGAAG
CCAGCGGAGG AAGGTACGTT CCACGCGCCG TCCTCATGGA TCTTGAACCC GGCACCATGG ATTCCGTCAG ATCCGGCCCC
TTCGGCCAGA TCTTCCGTCC CGACAACTTT GTCTTCGGCC AGTCCGGCGC CGGCAACAAC TGGGCCAAAG GCCACTACAC
TGAAGGGGCC GAACTCATCG ACTCAGTTCT CGACGTCGTT CGCAAGGAAG CCGAAAATTG CGATTGCTTG CAAGGGTTTC
AGGTGTGCCA TTCTCTTGGT GGTGGAACGG GTTCCGGCAT GGGGACGCTT CTGATCTCAA AGATTCGCGA GGAGTATCCA
GATCGGATGA TGTTGACGTT TTCGGTGTTT CCTTCTCCTA AGGTTTCTGA CACCGTTGTG GAGCCTTACA ATGCTACGCT
CTCTGTTCAC CAACTAGTAG AGAACGCTGA TGAGTGTATG GTTCTGGACA ATGAGGCTCT CTACGACATT TGTTTCAGGA
CCCTCAAGCT CGCTACACCC ACCTTTGGTG ACCTTAACCA CCTGATTTCT GCCACCATGA GTGGAGTTAC TTGCTGTCTA
CGTTTCCCTG GGCAACTGAA CTCAGATCTT CGCAAGCTTG CTGTTAATCT TATCCCATTC CCCCGGCTCC ATTTCTTTAT
GGTTGGGTTT GCGCCCTTGA CATCTAGAGG ATCCCAGCAG TACCGTGCTT TGACTGTTCC TGAATTAACA CAGCAAATGT
GGGATGCTAA GAACATGATG TGTGCTGCTG ATCCTCGTCA TGGTCGTTAT TTGACTGCAT CAGCAATGTT CCGTGGTAAG
ATGAGCACAA AGGAGGTAGA CGAGCAAATG ATCAATGTGC AGAACAAGAA TTCTTCATAT TTCGTTGAGT GGATACCTAA
TAATGTGAAG TCCAGCGTGT GTGATATCCC GCCTAAGGGT CTCAAAATGG CTTCCACTTT CATTGGCAAT TCAACTTCAA
TCCAGGAGAT GTTCAGGAGA GTTAGTGAGC AGTTCACGGC TATGTTCAGG CGTAAGGCTT TCTTGCATTG GTACACTGGA
GAAGGAATGG ACGAAATGGA GTTCACTGAG GCTGAGAGTA ACATGAACGA TCTTGTTGCG GAGTATCAGC AGTACCAGGA
TGCTACTGCC GATGACGAAG AGTACGACGA GGAGGAGGAA GAAGAGGAAA TTCCAGCTTA A

[show][hide][copy]PROTEIN

>Vigan.05G109400.01
MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYSGDS ELQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP
FGQIFRPDNF VFGQSGAGNN WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP
DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL
RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM CAADPRHGRY LTASAMFRGK
MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
EGMDEMEFTE AESNMNDLVA EYQQYQDATA DDEEYDEEEE EEEIPA*