GBrowse Details

Vigan.05G113000.01

Basic Information:
Name: Vigan.05G113000.01
Multiple alignment
Variant Information
Position: Chr05:8919369..8923023 (- strand)
Length: 3655
Functional Information:
Description: Similar to Epsilon 1-COP. [T2DNN5, Phaseolus vulgaris]
GO: Biological Process: retrograde vesicle-mediated transport, Golgi to ER (GO:0006890)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: protein binding (GO:0005515)
InterPro: Coatomer, epsilon subunit (IPR006822)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:96.66,90.66,74.35,35.78,100.34,116.07,64.72,65.90
Arabidopsis thaliana homolog: AT1G30630.1
Automatic updates:
Name: NM_001249986 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max epsilon1-COP (COPE1), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254128 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max epsilon2-COP (COPE2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:8919369..8919768 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr05:8919769..8919865 (- strand)
Length: 97
Type: CDS
Position: Chr05:8921363..8921442 (- strand)
Length: 80
Type: CDS
Position: Chr05:8921759..8921914 (- strand)
Length: 156
Type: CDS
Position: Chr05:8922147..8922282 (- strand)
Length: 136
Type: CDS
Position: Chr05:8922378..8922529 (- strand)
Length: 152
Type: CDS
Position: Chr05:8922603..8922854 (- strand)
Length: 252
Type: CDS
Position: Chr05:8922855..8923023 (- strand)
Length: 169
Type: five_prime_UTR


>Vigan.05G113000.01
GACTGGGCAG AGAATATGAA GCCCGTGTTA TCACTGTTTA GACGTTGATG GCAGGCCCAA TAACAGCCCA GAATACTGAG
AACACGAAAC AAAAAGTGCG AGTGACCGAG CGAGTCTAAG TTCTCTCTCT CTGAATCGTT TGAGTGATCG CTGAGATCTG
AATCTATCTA TGGCGACACC GGACCACCTG TTCAACCTCC GCAACAATTT CTACCTCGGC GCCTACCAAG CCGCCATCAA
CAGCAGCGAC GTCTCCAACC TCTCGGAAGA AGACGCCCTG GAGCGCGACA CCCTCGTCCA CCGCTGCTAC ATCGCCCTTG
GCCAGTTGCA GTTCGTCATT TCCGAGATCC ATGACGATGC TCCCACTCCT CTCCAAGCCG TCAAACTCCT CGCCCTCTAT
TTCTCCTCTC CCGACACCAA GGACTCTGCC ATCTCCAGCC TCAAGGAATG GCTCGCGGAT CCCGCCATCG GAAACAACCC
CACTCTCAGG CTCGTCGCCG GTCTCGTCTT CCTCCACGAG AATGATTTCA ACGAAGCACT TAAACACACC AATGCCGGAG
GGACCATGGA ACTGCACGCA TTGAATGTTC AGATCTTCAT TAAGATGCAT AGGTCGGATT ACGCGGAGAG GCAGCTGCGG
ATCATGCAGC AGATTGATGA GGATCACACT CTCACTCAAC TGGCCAATGC GTGGCTCGAT TTGGCTGTGG GAGGGTCGAA
GATTCAGGAG GCGTATCTGA TATTCCAAGA TATGTCGGAG AGGTATCAGT CCACCAGTTT GCTTTTGAAT GGCAAGGCGG
TTTGCTGCAT GCACATGGGC AATTTTGACG AAGCAGAGAC CCTTTTGGTT GAAGCGCTGA ACAAGGATGC CAGGGATCCT
GAAACGCTAG CCAATCTAGT TGTATGCTGT CTTCACCTTG GCAAGCCATC TAACAAATCA TTCAGCCAGC TGAAACTTTC
TCACGCAGAT CATGTACTCG TCAAGCGGGT AACATCAGCT GAAGAAAGTT TTGATAGAGC GCTACAAACA TTTTCTTCAT
GAGTCGATTA TTCAATTTCT TTCGGGAGTT GAATGGTTTG TGGTCTTCCA TGCAATTTTT ACACCTTGTC GTGGCCATTG
TATTGGGTTG CGTATCTTAG AACATAATCA ACTGGGTAAT GTGGCATAGT ATTCAAATTT ATAACATTGG TTTACTGAGT
CTTGATGTTG TAAAAGCTAC ATCTGACATT AAGCAAGTTC ATTTACATCG TATATTTTAC TAAAAGAGCA AGAAATGCCA
ATAGGTATTT TTGAGTAAAC AAGATCACTG TTGTGTGGAT GGATTGGCGA AGCTGTATTC TATTCTATTT TATCCGAAGT
TTTGCATTCT TCTATTTGTA TCTCTCATCT CAAAATAAAA ATATTGTGGT GAATTAGGTA TTTACCTACT AAATTGTGTA
TA

>Vigan.05G113000.01
ATGGCGACAC CGGACCACCT GTTCAACCTC CGCAACAATT TCTACCTCGG CGCCTACCAA GCCGCCATCA ACAGCAGCGA
CGTCTCCAAC CTCTCGGAAG AAGACGCCCT GGAGCGCGAC ACCCTCGTCC ACCGCTGCTA CATCGCCCTT GGCCAGTTGC
AGTTCGTCAT TTCCGAGATC CATGACGATG CTCCCACTCC TCTCCAAGCC GTCAAACTCC TCGCCCTCTA TTTCTCCTCT
CCCGACACCA AGGACTCTGC CATCTCCAGC CTCAAGGAAT GGCTCGCGGA TCCCGCCATC GGAAACAACC CCACTCTCAG
GCTCGTCGCC GGTCTCGTCT TCCTCCACGA GAATGATTTC AACGAAGCAC TTAAACACAC CAATGCCGGA GGGACCATGG
AACTGCACGC ATTGAATGTT CAGATCTTCA TTAAGATGCA TAGGTCGGAT TACGCGGAGA GGCAGCTGCG GATCATGCAG
CAGATTGATG AGGATCACAC TCTCACTCAA CTGGCCAATG CGTGGCTCGA TTTGGCTGTG GGAGGGTCGA AGATTCAGGA
GGCGTATCTG ATATTCCAAG ATATGTCGGA GAGGTATCAG TCCACCAGTT TGCTTTTGAA TGGCAAGGCG GTTTGCTGCA
TGCACATGGG CAATTTTGAC GAAGCAGAGA CCCTTTTGGT TGAAGCGCTG AACAAGGATG CCAGGGATCC TGAAACGCTA
GCCAATCTAG TTGTATGCTG TCTTCACCTT GGCAAGCCAT CTAACAAATC ATTCAGCCAG CTGAAACTTT CTCACGCAGA
TCATGTACTC GTCAAGCGGG TAACATCAGC TGAAGAAAGT TTTGATAGAG CGCTACAAAC ATTTTCTTCA TGA

>Vigan.05G113000.01
MATPDHLFNL RNNFYLGAYQ AAINSSDVSN LSEEDALERD TLVHRCYIAL GQLQFVISEI HDDAPTPLQA VKLLALYFSS
PDTKDSAISS LKEWLADPAI GNNPTLRLVA GLVFLHENDF NEALKHTNAG GTMELHALNV QIFIKMHRSD YAERQLRIMQ
QIDEDHTLTQ LANAWLDLAV GGSKIQEAYL IFQDMSERYQ STSLLLNGKA VCCMHMGNFD EAETLLVEAL NKDARDPETL
ANLVVCCLHL GKPSNKSFSQ LKLSHADHVL VKRVTSAEES FDRALQTFSS *