VIGGS:GBrowse

Vigan.05G114500.01

Basic Information:

Name:	Vigan.05G114500.01 Multiple alignment Variant Information
Position:	Chr05:9037870..9040393 (+ strand)
Length:	2524

Functional Information:

Description:	Similar to Protein phosphatase 2C 13-like protein. [T2DN72, Phaseolus vulgaris]
GO:	Biological Process: protein dephosphorylation (GO:0006470)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: protein serine/threonine phosphatase activity (GO:0004722)
InterPro:	Protein phosphatase 2C, manganese/magnesium aspartate binding site (IPR000222)
	Protein phosphatase 2C (PP2C)-like domain (IPR001932)
	Protein phosphatase 2C (IPR015655)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:10.62,19.05,4.35,5.40,8.89,7.13,5.59,4.43
Arabidopsis thaliana homolog:	AT1G48040.1

Automatic updates:

Name:	NM_001317700 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable protein phosphatase 2C 13 (LOC100798957), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:9037870..9038063 (+ strand)
Length:	194
Type:	five_prime_UTR

Position:	Chr05:9038064..9038252 (+ strand)
Length:	189
Type:	CDS

Position:	Chr05:9038899..9039894 (+ strand)
Length:	996
Type:	CDS

Position:	Chr05:9039895..9040393 (+ strand)
Length:	499
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G114500.01
GAGGCGAAAG AAAACAAATA AAAACGCACG AAAGCAAACG GGAAATTCTG TTGTTAAGAG CTCTCAGAAA AAAAGGAAAA
CCCTAATTGG AAACGCTTTC GCAATCCCTA AACCGTAGCC CCAGTGATCC GTTGCAGTGG TTTTGGAAGA GGCGAGCTAA
ACGCGGTGTC TTGGCGATCA TCGTGAGCAA GAACATGGTC GTAGAAACGG AAATCATCTG CCAGAAGAGC ATGCCCATGC
TGGACGTGAA GTACCACCTT TGCGTGGCGC AAGAACACGG TGTTAAGGTT GATGTTTCGC CCACCTCCAA CGTTGTTCCC
ATCTTCGGTC ACGTGAGGGT TGCCGCCGAA TCTGTTTCTA CGGAAACGAC TCGTTTTGAA TCGGCTGTGA GTTTGCCTGA
GATGATTGGA GATTCAAGTT TAGAGGCTCC TGCTACTAAG TTTACACCAG ATGTGCGATC TGGCTGTTGT GCTGATATTG
GACCCAGGGG GTCTATGGAT GATGAGCACA TTCAGATAGA TGATCTAGCT GCGCACCTTG GATTCAACTT TGAGCATCCT
ATGGCAAGTG CTTTTTATGC AGTTTTTGAT GGGCATGGAG GGCCAGATGC TGCTGCCTTT GTTAAAAACA ACGCTATGAG
ATTATTTTTT GAAGATGCTC ATATGCTGCA ATCATACGAT GCTGATGCGC TTTTTCTGAA GAGGTTGGAA GATTCTCATC
GAAAGGCGTT TTTGGGAGCA GACATTACCT TGGCTGATGA ACGAAGTGTT AGTAGTTCAT GTGGAACAAC GGCGTTGACT
GCTCTTGTAC TCGGGAGGTA TTTGATGGTT GCTAATGCTG GGGACTGTAG AGCTGTTCTT TGTAAGCGAG GCGTAGCTGT
TGATATGTCC CAAGATCACA GACCGAGTTA TTTACCAGAA CGCAGGAGAG TGGAGGAGAT GGGTGGTTAT ATTGATGATG
GGTATCTCAA TGGTCATCTT TCTGTGACTC GTGCTCTTGG GGATTGGGAC TTGAAAAATG CACTTGGTTC TGTGTCGCCT
CTTATTGCCG ACCCGGATGT TCAGGTGGTC ACATTGACAG AGGAGGATGA GTTCTTGATC ATTGGTTGTG ATGGTATTTG
GGATGTACTG TCAAGCCAGG ATGCTGTTAG TCTGGTGCGG CGTGGATTAA GAAGGCATGA CGATCCTGAA CAATGTGCCA
GAGAGCTAGT TAAGGAAGCT TTGCGCCTAC ACTCCTCAGA TAATCTTACT GCGATTGTTA TCTGCTTGTC CCCTGTCCAG
ATTGTTGAGT CTTGTCTACC CCAAAGGCGA AGATTCAGAT TTTGCTCCCT GTCTGAAGAG GCCCGGAACA GGTTGAGGAG
TTTGCTAGAG GGAAACTGAA TGTAAATATG GTTTGCACGA TTCACAATCA TTCCTTTCAT GAAAAGATTG ATTCGTGTTT
GTAGGCTGTT TTAGGTTTAG AGCCAAGCAG TCAACAGTTT TGTAGTGATA GAAAAGGATA ATTGTTGGGA GTTTAGAACT
ATTTAATTTA GGGAATTTAT CTCGGTTATT TTGGTGGATG TTGAGAAACA AGTAGCTAGC TAATTTTGGC GGGAACACTG
GAGGATTTGA TTTCAGATCA TTGTTAGATC TGTATTTTAT GAGATGATTT AGACTTCTCA GCAAGGATGT AGGTGAATGC
ATCGACCAAA CTAGTTATTT TCTTGACTGT TGCATTCAAC AGAGATTTGT TTATGGGATG AGATAGTTGG GTAGAGGGCA
CGTTTCAGCC TATATGCAGC CTATATGATT TTTTCTCTCT ACACGTTTAC TTCTAATTCT CTCAAACTCT CAAGTGCTAT
CAGAGTCAAG GCGCTGGAAA ATACAATTTC ATATGAAC

[show][hide][copy]CDS

>Vigan.05G114500.01
ATGGTCGTAG AAACGGAAAT CATCTGCCAG AAGAGCATGC CCATGCTGGA CGTGAAGTAC CACCTTTGCG TGGCGCAAGA
ACACGGTGTT AAGGTTGATG TTTCGCCCAC CTCCAACGTT GTTCCCATCT TCGGTCACGT GAGGGTTGCC GCCGAATCTG
TTTCTACGGA AACGACTCGT TTTGAATCGG CTGTGAGTTT GCCTGAGATG ATTGGAGATT CAAGTTTAGA GGCTCCTGCT
ACTAAGTTTA CACCAGATGT GCGATCTGGC TGTTGTGCTG ATATTGGACC CAGGGGGTCT ATGGATGATG AGCACATTCA
GATAGATGAT CTAGCTGCGC ACCTTGGATT CAACTTTGAG CATCCTATGG CAAGTGCTTT TTATGCAGTT TTTGATGGGC
ATGGAGGGCC AGATGCTGCT GCCTTTGTTA AAAACAACGC TATGAGATTA TTTTTTGAAG ATGCTCATAT GCTGCAATCA
TACGATGCTG ATGCGCTTTT TCTGAAGAGG TTGGAAGATT CTCATCGAAA GGCGTTTTTG GGAGCAGACA TTACCTTGGC
TGATGAACGA AGTGTTAGTA GTTCATGTGG AACAACGGCG TTGACTGCTC TTGTACTCGG GAGGTATTTG ATGGTTGCTA
ATGCTGGGGA CTGTAGAGCT GTTCTTTGTA AGCGAGGCGT AGCTGTTGAT ATGTCCCAAG ATCACAGACC GAGTTATTTA
CCAGAACGCA GGAGAGTGGA GGAGATGGGT GGTTATATTG ATGATGGGTA TCTCAATGGT CATCTTTCTG TGACTCGTGC
TCTTGGGGAT TGGGACTTGA AAAATGCACT TGGTTCTGTG TCGCCTCTTA TTGCCGACCC GGATGTTCAG GTGGTCACAT
TGACAGAGGA GGATGAGTTC TTGATCATTG GTTGTGATGG TATTTGGGAT GTACTGTCAA GCCAGGATGC TGTTAGTCTG
GTGCGGCGTG GATTAAGAAG GCATGACGAT CCTGAACAAT GTGCCAGAGA GCTAGTTAAG GAAGCTTTGC GCCTACACTC
CTCAGATAAT CTTACTGCGA TTGTTATCTG CTTGTCCCCT GTCCAGATTG TTGAGTCTTG TCTACCCCAA AGGCGAAGAT
TCAGATTTTG CTCCCTGTCT GAAGAGGCCC GGAACAGGTT GAGGAGTTTG CTAGAGGGAA ACTGA

[show][hide][copy]PROTEIN

>Vigan.05G114500.01
MVVETEIICQ KSMPMLDVKY HLCVAQEHGV KVDVSPTSNV VPIFGHVRVA AESVSTETTR FESAVSLPEM IGDSSLEAPA
TKFTPDVRSG CCADIGPRGS MDDEHIQIDD LAAHLGFNFE HPMASAFYAV FDGHGGPDAA AFVKNNAMRL FFEDAHMLQS
YDADALFLKR LEDSHRKAFL GADITLADER SVSSSCGTTA LTALVLGRYL MVANAGDCRA VLCKRGVAVD MSQDHRPSYL
PERRRVEEMG GYIDDGYLNG HLSVTRALGD WDLKNALGSV SPLIADPDVQ VVTLTEEDEF LIIGCDGIWD VLSSQDAVSL
VRRGLRRHDD PEQCARELVK EALRLHSSDN LTAIVICLSP VQIVESCLPQ RRRFRFCSLS EEARNRLRSL LEGN*