GBrowse Details

Vigan.05G114600.01

Basic Information:
Name: Vigan.05G114600.01
Multiple alignment
Variant Information
Position: Chr05:9044702..9049109 (+ strand)
Length: 4408
Functional Information:
Description: Similar to Uncharacterized protein. [I1MGB0, Glycine max]
GO: Molecular Function: RNA binding (GO:0003723)
InterPro: Ribosomal protein S1, RNA-binding domain (IPR003029)
Nucleic acid-binding, OB-fold (IPR012340)
RNA-binding domain, S1 (IPR022967)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.94,12.79,11.63,17.42,10.61,14.29,10.29,9.23
Arabidopsis thaliana homolog: AT5G30510.1
Automatic updates:
Name: NM_001361096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S1 (LOC100806905), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361100 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S1 (LOC100810511), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9044702..9044884 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr05:9044885..9045145 (+ strand)
Length: 261
Type: CDS
Position: Chr05:9045851..9046126 (+ strand)
Length: 276
Type: CDS
Position: Chr05:9046376..9046456 (+ strand)
Length: 81
Type: CDS
Position: Chr05:9047420..9047701 (+ strand)
Length: 282
Type: CDS
Position: Chr05:9047785..9047895 (+ strand)
Length: 111
Type: CDS
Position: Chr05:9048179..9048265 (+ strand)
Length: 87
Type: CDS
Position: Chr05:9048733..9048837 (+ strand)
Length: 105
Type: CDS
Position: Chr05:9048838..9049109 (+ strand)
Length: 272
Type: three_prime_UTR


>Vigan.05G114600.01
GGTATTACAG AGGGAAAGCA AAGGATGTTT GAATAGAGAT TTGTTTAGAA ATTATAACTT TGATCTTTGA AGTTGTAAGT
CTCTGCGCCA TAAAAAAAAG TGAAACAATT ACTTAATTTC CTTTCATTTC GATAATTCAC GCCTTATCTA TCAAACACCA
AGACTGCACT ATACAAAGCT GCCATGCCGA TGGCGATTAC GGCGTCGCAG TTGCGGTGGG GATGGAGGCC GCCGCCGAAG
CATCAACGGC GTCCTATGGC TCCGGTGGTC TGTTCAGTGG CTATAGAGAA CGCGCAGAAG AAAGAGAGAG CGAGACTAAA
AACACTTTTC GAAGAAGCGT ACGAGAGGTG CCGCACTGCT CCCACTGAAG GCGTCTCCTT CAGCCTCCAG CAATTCACGG
ACGCTCTCGA CAAATATGAC TACGAATCCG AAGTTGGCAC TAAGGTTAAG GGCACTGTTT TTGCCACAGA TGCGGGTGGA
GCTTATGTTG ACATTACTGC AAAGTCCACA GCCTACTTGC CGCTGCAAGA GGCTTGCATT AGCAGAATTA AGAAAGTTGA
AGAAGCAGGT ATAGTTCCTG GGTTGAGGGA GGAATTTATG ATCATTGGTG AGAATGGAAC GGATGATACA TTGATCCTGA
GTTTGAGGTC TATCCAATAT GACCTTGCAT GGGAGCGCTG TAGACAACTG CAGGCTGAAG ATGCTGTTGT CAAGGGTAAG
GTTGTCAGTG CAAACAAAGG CGGTCTGGTG GCTCAAGTGG AAGGCCTCAA GGGTTTTGTT CCATTTTCAC AGATATCAGC
GAAATCAACT GGAGAAGAGC TTCTTGAGCA GGAGATTTCT TTTAAGTTTG TGGAGGTGGA TGAGGAACAG TCTAGACTTG
TCCTCAGTCA CCGCAAAGCT GTGGCTGAGA GCCAAGGACA GTTAGGAATT GGATCCGTAG TCATTGGCTC TGTTCAAAGC
ATAAAGCCAT ACGGTGCCTT CGTTGACATT GGTGGAATCA GTGGCCTCCT TCATGTCAGT CAGATCAGTC ATGACCGTAT
AACTGACATT GCGACTGTTC TTCAACCTGG TGATATTCTG AAGGTGATGA TCTTAAGTCA TGATAGGCAG AGAGGACGTG
TAAGTCTTTC CACAAAGAAG TTGGAACCCT CACCTGGTGA CATGATTCGC AACCCAAAGC TTGTCTTTGA GAAGGCGGAG
GAGATGGCTC AGACATTCAG ACAGAGAATC GCACAAGCAG AAGCTATGGC TCGTGCTGAT ATGCTCAGGT TCCAGCCAGA
GGGTGGATTA GGTCTCAGCG GTGAGGGAAT CTTAGGACCA CTTTCTTCAG ACTTGCCTCC AGAGGGAGTG AATCTGAGTG
AGGTACCCCT GGCTGAAGAG TCATGATTCT GAACTGAGAG CCTTTTGTTT TTCTTTTTTA TACCTTGGTC TGAATATTGT
TGTAGAAAGA CGAACCTAAT GTAAAGACCG GTTTTGTAGC AACTCATTTT TGTAGAATAG GCTGTTGTAG AACTCTTCAT
TTTCTCTCTA AATTATTTCG AGCTATTGTC GCTGTTATCT TTGATTAGAT CGAAAATAGT GAAAACCAGT TCAAAAACAA
GATTTACATA TTTGTCTCTG ATAACTTCAT CATTACCAAC TGCTACAGGC CAAGAGTA

>Vigan.05G114600.01
ATGCCGATGG CGATTACGGC GTCGCAGTTG CGGTGGGGAT GGAGGCCGCC GCCGAAGCAT CAACGGCGTC CTATGGCTCC
GGTGGTCTGT TCAGTGGCTA TAGAGAACGC GCAGAAGAAA GAGAGAGCGA GACTAAAAAC ACTTTTCGAA GAAGCGTACG
AGAGGTGCCG CACTGCTCCC ACTGAAGGCG TCTCCTTCAG CCTCCAGCAA TTCACGGACG CTCTCGACAA ATATGACTAC
GAATCCGAAG TTGGCACTAA GGTTAAGGGC ACTGTTTTTG CCACAGATGC GGGTGGAGCT TATGTTGACA TTACTGCAAA
GTCCACAGCC TACTTGCCGC TGCAAGAGGC TTGCATTAGC AGAATTAAGA AAGTTGAAGA AGCAGGTATA GTTCCTGGGT
TGAGGGAGGA ATTTATGATC ATTGGTGAGA ATGGAACGGA TGATACATTG ATCCTGAGTT TGAGGTCTAT CCAATATGAC
CTTGCATGGG AGCGCTGTAG ACAACTGCAG GCTGAAGATG CTGTTGTCAA GGGTAAGGTT GTCAGTGCAA ACAAAGGCGG
TCTGGTGGCT CAAGTGGAAG GCCTCAAGGG TTTTGTTCCA TTTTCACAGA TATCAGCGAA ATCAACTGGA GAAGAGCTTC
TTGAGCAGGA GATTTCTTTT AAGTTTGTGG AGGTGGATGA GGAACAGTCT AGACTTGTCC TCAGTCACCG CAAAGCTGTG
GCTGAGAGCC AAGGACAGTT AGGAATTGGA TCCGTAGTCA TTGGCTCTGT TCAAAGCATA AAGCCATACG GTGCCTTCGT
TGACATTGGT GGAATCAGTG GCCTCCTTCA TGTCAGTCAG ATCAGTCATG ACCGTATAAC TGACATTGCG ACTGTTCTTC
AACCTGGTGA TATTCTGAAG GTGATGATCT TAAGTCATGA TAGGCAGAGA GGACGTGTAA GTCTTTCCAC AAAGAAGTTG
GAACCCTCAC CTGGTGACAT GATTCGCAAC CCAAAGCTTG TCTTTGAGAA GGCGGAGGAG ATGGCTCAGA CATTCAGACA
GAGAATCGCA CAAGCAGAAG CTATGGCTCG TGCTGATATG CTCAGGTTCC AGCCAGAGGG TGGATTAGGT CTCAGCGGTG
AGGGAATCTT AGGACCACTT TCTTCAGACT TGCCTCCAGA GGGAGTGAAT CTGAGTGAGG TACCCCTGGC TGAAGAGTCA
TGA

>Vigan.05G114600.01
MPMAITASQL RWGWRPPPKH QRRPMAPVVC SVAIENAQKK ERARLKTLFE EAYERCRTAP TEGVSFSLQQ FTDALDKYDY
ESEVGTKVKG TVFATDAGGA YVDITAKSTA YLPLQEACIS RIKKVEEAGI VPGLREEFMI IGENGTDDTL ILSLRSIQYD
LAWERCRQLQ AEDAVVKGKV VSANKGGLVA QVEGLKGFVP FSQISAKSTG EELLEQEISF KFVEVDEEQS RLVLSHRKAV
AESQGQLGIG SVVIGSVQSI KPYGAFVDIG GISGLLHVSQ ISHDRITDIA TVLQPGDILK VMILSHDRQR GRVSLSTKKL
EPSPGDMIRN PKLVFEKAEE MAQTFRQRIA QAEAMARADM LRFQPEGGLG LSGEGILGPL SSDLPPEGVN LSEVPLAEES
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