GBrowse Details

Vigan.05G118000.01

Basic Information:
Name: Vigan.05G118000.01
Multiple alignment
Variant Information
Position: Chr05:9418127..9426805 (+ strand)
Length: 8679
Functional Information:
Description: Similar to Huntingtin-interacting protein K. [A2Q2W3, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.59,6.80,21.78,14.18,32.84,40.28,19.43,20.06
Arabidopsis thaliana homolog: AT3G06610.1
Automatic updates:
Name: NM_001249262 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527445 (LOC100527445), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9418127..9418266 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr05:9418267..9418451 (+ strand)
Length: 185
Type: CDS
Position: Chr05:9425900..9425966 (+ strand)
Length: 67
Type: CDS
Position: Chr05:9426050..9426130 (+ strand)
Length: 81
Type: CDS
Position: Chr05:9426131..9426805 (+ strand)
Length: 675
Type: three_prime_UTR


>Vigan.05G118000.01
TAGGGCGATC ACAATAAGGG AAGAGGGAGC AGCGCCATTG TTCCTATTGT GGAGACTTTG AATTTTGTCC GAGTGGGTGG
GTTAGGGCAT AGTAGAGCAA AGGGAAGAAG AGAAGGGTGG TGTTAGGGTT TGGAGCAACA ATGGAGGGTG GAGAGGAGGG
AGTGGAGATG GTGGTGGACT CGAAGGACTT ACAGCAACAG AGTAAAGCCT TGGACAAGCT CACTGACCGT GTCGAGGATC
GCCAATTGGA CTCTACTCGC GTCCAGGAGG CAATGGCTTC CATCGCTGCT TCTGCTGAAG CTGATCGCAA TGCCATGCGC
ATCAGGGAGA AAGAATTAGC TGCTGTTAAG ATAAATGCAG CGGATGTTGA TATAATTGCT AATGAGCTAG AGTTGGACAA
AAAGGTTGCG GAAAGAACTT TGCGCGAGCA CAAAGGTGAT GCAGTTGCTG CCATTCGGCA CTTGCTTCAC TAGAGACGTG
ATAATGAACA AGGGTCAATG CTTCAGAAAA TTACTATGCA CCAGCTTATA TTGTTTTTCA TTTAAATTGA ATCTCAACTG
TATTCTGGCC TAATTCATTG AGAAATCATA AATTTATTGT TGATTAACTG TACCTCTCCT CTCCCTAATC TTTCCTGTGC
TATAAAAGTA GCCATTATCT AATGGAGAAG TCCTTCATGA AGATCTCCAC GCGTGTCTCA TACACATGCT TGCTCGTTAA
GCACATAGTT GTCAACTTGA AGCCCAGCAT GTGATTTGTT CAAATCAAAT GGTAAAAAGA GCCTTGCTTT TATGTGCTCT
TATGAAATTG TGGTGTGTAA TGCTTGTGCG AATGGCATCT TCTGTTTTGT TTGTTACATT CAAATTGATA AAGTTACATT
TCAGATTTTT GCCATTGTTT CTTGAAATGG ACTGTGATGG GATGGAAGTG CCCACATTCT GTGACTTTTT GCTTATTCAT
TAAGATTCCG ATAAATTATG TTACTGGCCC CTTACAATGC CAAGGTCCCC CACCCCCACT CTATGGTACC TTTCCTTTCA
CTGTCCATAC GCCATAATAA TGTCTTCAGA GTTATTGTCG TCCCATTTTT TGTTTGTAAC CACTTTTTTC CACTTTGTGT
AATAAAGTTA CAAACCATAT TCATTCAA

>Vigan.05G118000.01
ATGGAGGGTG GAGAGGAGGG AGTGGAGATG GTGGTGGACT CGAAGGACTT ACAGCAACAG AGTAAAGCCT TGGACAAGCT
CACTGACCGT GTCGAGGATC GCCAATTGGA CTCTACTCGC GTCCAGGAGG CAATGGCTTC CATCGCTGCT TCTGCTGAAG
CTGATCGCAA TGCCATGCGC ATCAGGGAGA AAGAATTAGC TGCTGTTAAG ATAAATGCAG CGGATGTTGA TATAATTGCT
AATGAGCTAG AGTTGGACAA AAAGGTTGCG GAAAGAACTT TGCGCGAGCA CAAAGGTGAT GCAGTTGCTG CCATTCGGCA
CTTGCTTCAC TAG

>Vigan.05G118000.01
MEGGEEGVEM VVDSKDLQQQ SKALDKLTDR VEDRQLDSTR VQEAMASIAA SAEADRNAMR IREKELAAVK INAADVDIIA
NELELDKKVA ERTLREHKGD AVAAIRHLLH *