GBrowse Details

Vigan.05G118200.01

Basic Information:
Name: Vigan.05G118200.01
Multiple alignment
Variant Information
Position: Chr05:9435291..9442291 (- strand)
Length: 7001
Functional Information:
Description: Similar to Phytochrome. [V7BQN0, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Biological Process: signal transduction (GO:0007165)
Biological Process: detection of visible light (GO:0009584)
Biological Process: red, far-red light phototransduction (GO:0009585)
Biological Process: protein-tetrapyrrole linkage (GO:0017006)
Biological Process: protein-chromophore linkage (GO:0018298)
Cellular Component: membrane (GO:0016020)
Molecular Function: phosphorelay sensor kinase activity (GO:0000155)
Molecular Function: signal transducer activity (GO:0004871)
Molecular Function: protein binding (GO:0005515)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: photoreceptor activity (GO:0009881)
Molecular Function: protein homodimerization activity (GO:0042803)
InterPro: PAS domain (IPR000014)
Phytochrome (IPR001294)
GAF domain (IPR003018)
Histidine kinase-like ATPase, ATP-binding domain (IPR003594)
Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain (IPR003661)
Signal transduction histidine kinase, core (IPR005467)
Signal transduction histidine kinase, homodimeric domain (IPR009082)
Phytochrome A/B/C/D/E (IPR012129)
Phytochrome, central region (IPR013515)
Phytochrome chromophore binding site (IPR013516)
PAS fold-2 (IPR013654)
PAS fold (IPR013767)
Phytochrome chromophore attachment domain (IPR016132)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.80,7.48,12.55,17.29,7.37,9.48,4.77,15.09
Arabidopsis thaliana homolog: AT1G09570.1, AT2G18790.1, AT4G16250.1, AT4G18130.1, AT5G35840.1
Automatic updates:
Name: NM_001253168 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phytochrome B-like (PHYB), mRNA.
PubMed ID: 22110748 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:9435291..9435938 (- strand)
Length: 648
Type: three_prime_UTR
Position: Chr05:9435939..9436155 (- strand)
Length: 217
Type: CDS
Position: Chr05:9436689..9436982 (- strand)
Length: 294
Type: CDS
Position: Chr05:9438353..9439160 (- strand)
Length: 808
Type: CDS
Position: Chr05:9439901..9441977 (- strand)
Length: 2077
Type: CDS
Position: Chr05:9441978..9442291 (- strand)
Length: 314
Type: five_prime_UTR


>Vigan.05G118200.01
CTTTAGTTTC AGACCACATA GAGGCAGGCT ATCGAGCAAT CGCGTCGCGT GCACGAGAAA CGCCAAACAA CAAAAGCAGC
GTTACTTTGC GAAAAATGCT GAAGCTGCCA CTGTCACTCT GAGCTTCTTC TTCTCTCTTT TGTTTATTTA TTTTATCTTA
TTTTCTTTCA CTCTTGCTTC AGGTCTCACT CACTGTCTTT TGTTAAGAGA GTTTCACACA CCAAACATAA CCTTATGAGA
AAAAATAATT AACAAAAAGA GGAAAAAGAA AACAAGTGAT AGAGGCAATT TTTGCGTGCG CGTTGTCGAC TTCAATGGCT
TCAGCAAGCG GAGCAGAGAA CTCGTCGGTT CCGCCGCAGC CACAAATTCA CAATTCGCGA ACGAAGCCGA GCCACCAGAA
CATCGACTCC ATGAGCAAAG CCATCGCGCA GTACACGGAG GACGCGAGGC TGCACGCGGT GTTCGAGCAG TCCGGCGAGT
CTGGGAGGTC ATTCGATTAC TCCCAATCGG TTCGCATCAC GTCGGAATCG GTTCCGGAGC AGCAGATAAC GGCGTATCTC
CTCAAAATCC AGCGCGGCGG CTTCATCCAG CCGTTCGGCT GCATGATCGC GGTCGACGAG CCCTCCTTCC GAATCCTGGG
ATACTCAGAG AACGCGCGCG ACATGCTCGG CATTACGCCG CAGTCCGTTC CCTCTATCGA CGACAAGCTC GAGGCCTTTG
CGCTAGGCGC GGACGTCCGC ACGCTATTCA CTCACTCCAG TGCCCTTCTT CTCGAGAAGG CCTTCGCCGC GCGTGAAATT
AGCCTCACGA ACCCTATCTG GATCCATTCC CGAACCTCCG GTAAGCCTTT TTATGGCATC CTTCACCGGA TTGACGTCGG
AATCGTCATC GATTTGGAGC CCGCGCGCAC GGAGGACCCA GCGCTTTCTA TCGCCGGTGC CGTTCAGTCG CAGAAGCTCG
CCGTGCGCGC GATTTCGCAG TTGCAGTCTC TCCCCGGCGG TGATGTTAAG CTTCTGTGTG ACACTGTTGT TGAGAGTGTT
AGGGAATTGA CAAGGTACGA TAGGGTTATG GTTTATAAGT TTCACGAGGA TGAGCATGGG GAGGTTGTTG CCGAGAGTAA
GAGGCCTGAT TTGGAGCCTT ACATTGGTTT GCATTATCCT GCCACTGATA TTCCTCAGGC TTCTAGGTTT TTGTTTAAGC
AGAATAGGGT TAGGATGATT GTGGATTGTC ATGCTTCTCC TGTGAGGGTG GTGCAGGATG AGGCTCTTGT GCAGCCTCTC
TGTTTGGTTG GGTCAACGCT CAGGGCCCCC CATGGTTGTC ATGCGCAGTA CATGGCTAAC ATGGGGTCTA TTGCGTCTTT
GGTCATGGCT GTTATTATTA ATGGAAATGA CGAGGAAGCT GTTGGTGGCC GGAGTCCGAT GAGGCTCTGG GGGCTTGTTG
TTTGCCATCA CACTTCTGCT AGGTGTATTC CTTTTCCCTT GAGGTATGCT TGTGAGTTTC TCATGCAGGC CTTTGGGCTG
CAGTTAAACA TGGAGCTTCA GTTGGCCGCA CAATCGTTGG AGAAACGGGT TTTGAGGACG CAGACTCTGT TGTGCGATAT
GCTTCTTAGG GACTCGCCTA CTGGCATTGT TACTCAGAGT CCTAGCATTA TGGACTTGGT GAAGTGTGAT GGGGCTGCTC
TTTATTGCCA AGGGAATTAT TATCCGTTAG GTGTGACTCC GACTGAGGCT CAGATAAGGG ATATCGTTGA GTGGTTATTG
GCCTTCCATG GAGATTCGAC TGGTTTAAGT ACCGATAGTC TTGCTGATGC TGGGTATCCT GGTGCTGCCT TGCTCGGGGA
TGCGGTTTGT GGGATGGCAG TTGCTTATAT CACCGAGAAG GATTTTCTTT TCTGGTTCAG GTCGCACACG GGAAAAGAGA
TCAAGTGGGG TGGTGCAAAG CATCATCCCG AGGACAAGGA TGATGGGCAG AGAATGCATC CCCGTTCTTC TTTCAAGGCA
TTTTTAGAAG TGGTGAAAAG CCGTAGCTTG CCATGGGAGA ATGCGGAAAT GGATGCAATT CACTCGTTGC AACTTATTCT
ACGTGACTCG TTTAAAGATA CTGAGCATAG CAATTCTAAG GCAGTTGTGG ATCCCCGTGT GGCAGAACTA GAGTTGCAAG
GGGTTGATGA ACTAAGTTCT GTGGCGAGAG AGATGGTTAG ATTGATAGAA ACAGCCACCG CTCCTATATT TGCGGTTGAT
ATTGATGGCC ACATAAATGG TTGGAATGCA AAGGTTTCAG AATTGACAGG ACTTGCTGTT GAGGAGGCTA TGGGGAAGTC
CTTGGTTCAT GATCTTGTGT TTAAGGAGTC TGAAGAAACT GTGGACAAGC TTCTTTCTCG TGCTTTAAAA GGTGAAGAAG
ATAAGAATGT TGAGATAAAA ATGAAGACGT TTCGCCCTGA ACATCAAAAT AAGGCAGTTT TTGTTGTGGT GAATGCTTGC
TCCAGCAAGG ATTATACAAA TAATATAGTT GGAGTGTGCT TTGTTGGTCA GGATGTTACT GGTCAAAAAA TTGTGATGGA
CAAATTCATC AACATACAAG GTGACTACAA GGCTATTGTG CACAGTCCAA ATCCCTTGAT CGCTCCCATT TTTGCATCGG
ACGATAATGC ATGTTGCCTA GAGTGGAACA CTGCCATGGA AAAACTTACA GGTTGGGGAC GTGGGGATGT CATTGGGAAA
ATGTTAGTGG GAGAGGTTTT TGGTAGTTGC TGTCCGTTGA AGGGTTCAGA TTCAATTACA AAGTTTATGA TTGTCTTACA
CAATGCACTT GGTGGACAAG ATACAGACAA ATTCCCTTTC TCATTTCTTG ATCGGCATGG AAAGTATATA CAAACTTTCC
TGACTGCAAA TAAGAGAGTT AACATGGATG GTCAGATCAT TGGGGCTTTT TGCTTTTTGC AAATTGTGAG TCCTGAACTT
CAACAGGCTC TGAAGGCACA GAGACAACAA GAGAAAACTT CCTTTGCTAG GATGAAAGAG TTAGCTTATA TTAGTCAAGG
AGTGAAGAAT CCTTTAAGTG GCATACGCTT TACGAATTCT CTTTTAGAGG CTACAAGCTT GACCGATGAG CAAAAGCAGT
TTCTTGAGAC CAGTGCTGCC TGTGAGAAGC AAATGTTAAA GATAATACGC GACATTGATC TTGAAAGCAT CGAGGATGGG
TCCTTGGAGC TTGAAAAGGG GGAATTCTTG CTTGGGAATG TCATGAATGC AGTTGTTAGC CAAGTAATGT TACTGTTAAG
AGAAAGAACT TTACAGTTAA TTTGTGATAT TCCAGAAGAA ATCAAGACAT TGGCTGTTTA TGGTGATCAA TTGAGGATTC
AACAAGTTTT GGCTGATTTC TTATTGAATA TAGTGCGCTA TGCACCATCT CCAGATGGTT GGGTAGAGAT TCATGTACAT
CCAAGAATAA AACAAATATC GGATGGGCTC ACTCTTCTCC ATGCTGAATT TAGAATGGTA TGTCCTGGTG AAGGTCTTCC
TCCTGAACTG ATTCAGGACA TGTTCAATAA CAGTCGGTGG GTGAGTCAAG AAGGTTTAGG GTTGAGCATG AGCAGGAAGA
TTCTAAAGGT AATGAACGGA GAAGTCCAGT ATATCAGGGA AGCAGAACGG TGCTACTTTT TTATTCTTCT TGAACTCCCT
GTGACGCGGA AAAACTCTAA AAAGGGTTAA ACAGGTATTC TGTAGCTATA AGATTAAAGA AAAAGCCCTG GCCTGCCCCC
TCATGCTGAC CGTTAGATAG TTTGTTGGCG AAAGTTATGC TCTCACCTAA CAAGGCAACA TATGGGACGA GAATTTGAAC
AGGCTGATTT GTGTAGTTAT CCCAAATTGG ACTGTTGTTC CTGACAAAAC CTGTTCGGTA CAGCAAGAGT GGCTTCTTCT
TATGTAGCTA AATGTAACCT TAGTCTTACT GATAAAGTTA TTGCAGAGTG GATGAAATGC ACACCTTGAT GGTCAAGTGG
AATCCCTTGT GAAAATTTTC AAGCAAATGC TTTGATGATA AGCAGCTGCA GTGAACTCCA ATCTGTTGTT GGATTGAACT
GCATTCATCT CCTGCATTGT CGTCTGTTCT AATAGTAACT GCTTACACGG AATGAGTTTC AAAGTCTGCA TATAATTGTA
AAATTATAGT CTCCCAAGAG GGTTGCCCTC TACGTGTTGC TTTCCAACTC TCCATTTCTT TTTTTATCTT GGCCTGTAAA
TCCCTTCCTA CTCCGTAATA AAAGCTGGGT TATTTATCCT CTATTTTTGG AAATTTCCTG TGAGCTAGCT TTTCTTTTAT
AAAAAAATAT TGGCATCTAT CTATCTTTAT TATCTAAA

>Vigan.05G118200.01
ATGGCTTCAG CAAGCGGAGC AGAGAACTCG TCGGTTCCGC CGCAGCCACA AATTCACAAT TCGCGAACGA AGCCGAGCCA
CCAGAACATC GACTCCATGA GCAAAGCCAT CGCGCAGTAC ACGGAGGACG CGAGGCTGCA CGCGGTGTTC GAGCAGTCCG
GCGAGTCTGG GAGGTCATTC GATTACTCCC AATCGGTTCG CATCACGTCG GAATCGGTTC CGGAGCAGCA GATAACGGCG
TATCTCCTCA AAATCCAGCG CGGCGGCTTC ATCCAGCCGT TCGGCTGCAT GATCGCGGTC GACGAGCCCT CCTTCCGAAT
CCTGGGATAC TCAGAGAACG CGCGCGACAT GCTCGGCATT ACGCCGCAGT CCGTTCCCTC TATCGACGAC AAGCTCGAGG
CCTTTGCGCT AGGCGCGGAC GTCCGCACGC TATTCACTCA CTCCAGTGCC CTTCTTCTCG AGAAGGCCTT CGCCGCGCGT
GAAATTAGCC TCACGAACCC TATCTGGATC CATTCCCGAA CCTCCGGTAA GCCTTTTTAT GGCATCCTTC ACCGGATTGA
CGTCGGAATC GTCATCGATT TGGAGCCCGC GCGCACGGAG GACCCAGCGC TTTCTATCGC CGGTGCCGTT CAGTCGCAGA
AGCTCGCCGT GCGCGCGATT TCGCAGTTGC AGTCTCTCCC CGGCGGTGAT GTTAAGCTTC TGTGTGACAC TGTTGTTGAG
AGTGTTAGGG AATTGACAAG GTACGATAGG GTTATGGTTT ATAAGTTTCA CGAGGATGAG CATGGGGAGG TTGTTGCCGA
GAGTAAGAGG CCTGATTTGG AGCCTTACAT TGGTTTGCAT TATCCTGCCA CTGATATTCC TCAGGCTTCT AGGTTTTTGT
TTAAGCAGAA TAGGGTTAGG ATGATTGTGG ATTGTCATGC TTCTCCTGTG AGGGTGGTGC AGGATGAGGC TCTTGTGCAG
CCTCTCTGTT TGGTTGGGTC AACGCTCAGG GCCCCCCATG GTTGTCATGC GCAGTACATG GCTAACATGG GGTCTATTGC
GTCTTTGGTC ATGGCTGTTA TTATTAATGG AAATGACGAG GAAGCTGTTG GTGGCCGGAG TCCGATGAGG CTCTGGGGGC
TTGTTGTTTG CCATCACACT TCTGCTAGGT GTATTCCTTT TCCCTTGAGG TATGCTTGTG AGTTTCTCAT GCAGGCCTTT
GGGCTGCAGT TAAACATGGA GCTTCAGTTG GCCGCACAAT CGTTGGAGAA ACGGGTTTTG AGGACGCAGA CTCTGTTGTG
CGATATGCTT CTTAGGGACT CGCCTACTGG CATTGTTACT CAGAGTCCTA GCATTATGGA CTTGGTGAAG TGTGATGGGG
CTGCTCTTTA TTGCCAAGGG AATTATTATC CGTTAGGTGT GACTCCGACT GAGGCTCAGA TAAGGGATAT CGTTGAGTGG
TTATTGGCCT TCCATGGAGA TTCGACTGGT TTAAGTACCG ATAGTCTTGC TGATGCTGGG TATCCTGGTG CTGCCTTGCT
CGGGGATGCG GTTTGTGGGA TGGCAGTTGC TTATATCACC GAGAAGGATT TTCTTTTCTG GTTCAGGTCG CACACGGGAA
AAGAGATCAA GTGGGGTGGT GCAAAGCATC ATCCCGAGGA CAAGGATGAT GGGCAGAGAA TGCATCCCCG TTCTTCTTTC
AAGGCATTTT TAGAAGTGGT GAAAAGCCGT AGCTTGCCAT GGGAGAATGC GGAAATGGAT GCAATTCACT CGTTGCAACT
TATTCTACGT GACTCGTTTA AAGATACTGA GCATAGCAAT TCTAAGGCAG TTGTGGATCC CCGTGTGGCA GAACTAGAGT
TGCAAGGGGT TGATGAACTA AGTTCTGTGG CGAGAGAGAT GGTTAGATTG ATAGAAACAG CCACCGCTCC TATATTTGCG
GTTGATATTG ATGGCCACAT AAATGGTTGG AATGCAAAGG TTTCAGAATT GACAGGACTT GCTGTTGAGG AGGCTATGGG
GAAGTCCTTG GTTCATGATC TTGTGTTTAA GGAGTCTGAA GAAACTGTGG ACAAGCTTCT TTCTCGTGCT TTAAAAGGTG
AAGAAGATAA GAATGTTGAG ATAAAAATGA AGACGTTTCG CCCTGAACAT CAAAATAAGG CAGTTTTTGT TGTGGTGAAT
GCTTGCTCCA GCAAGGATTA TACAAATAAT ATAGTTGGAG TGTGCTTTGT TGGTCAGGAT GTTACTGGTC AAAAAATTGT
GATGGACAAA TTCATCAACA TACAAGGTGA CTACAAGGCT ATTGTGCACA GTCCAAATCC CTTGATCGCT CCCATTTTTG
CATCGGACGA TAATGCATGT TGCCTAGAGT GGAACACTGC CATGGAAAAA CTTACAGGTT GGGGACGTGG GGATGTCATT
GGGAAAATGT TAGTGGGAGA GGTTTTTGGT AGTTGCTGTC CGTTGAAGGG TTCAGATTCA ATTACAAAGT TTATGATTGT
CTTACACAAT GCACTTGGTG GACAAGATAC AGACAAATTC CCTTTCTCAT TTCTTGATCG GCATGGAAAG TATATACAAA
CTTTCCTGAC TGCAAATAAG AGAGTTAACA TGGATGGTCA GATCATTGGG GCTTTTTGCT TTTTGCAAAT TGTGAGTCCT
GAACTTCAAC AGGCTCTGAA GGCACAGAGA CAACAAGAGA AAACTTCCTT TGCTAGGATG AAAGAGTTAG CTTATATTAG
TCAAGGAGTG AAGAATCCTT TAAGTGGCAT ACGCTTTACG AATTCTCTTT TAGAGGCTAC AAGCTTGACC GATGAGCAAA
AGCAGTTTCT TGAGACCAGT GCTGCCTGTG AGAAGCAAAT GTTAAAGATA ATACGCGACA TTGATCTTGA AAGCATCGAG
GATGGGTCCT TGGAGCTTGA AAAGGGGGAA TTCTTGCTTG GGAATGTCAT GAATGCAGTT GTTAGCCAAG TAATGTTACT
GTTAAGAGAA AGAACTTTAC AGTTAATTTG TGATATTCCA GAAGAAATCA AGACATTGGC TGTTTATGGT GATCAATTGA
GGATTCAACA AGTTTTGGCT GATTTCTTAT TGAATATAGT GCGCTATGCA CCATCTCCAG ATGGTTGGGT AGAGATTCAT
GTACATCCAA GAATAAAACA AATATCGGAT GGGCTCACTC TTCTCCATGC TGAATTTAGA ATGGTATGTC CTGGTGAAGG
TCTTCCTCCT GAACTGATTC AGGACATGTT CAATAACAGT CGGTGGGTGA GTCAAGAAGG TTTAGGGTTG AGCATGAGCA
GGAAGATTCT AAAGGTAATG AACGGAGAAG TCCAGTATAT CAGGGAAGCA GAACGGTGCT ACTTTTTTAT TCTTCTTGAA
CTCCCTGTGA CGCGGAAAAA CTCTAAAAAG GGTTAA

>Vigan.05G118200.01
MASASGAENS SVPPQPQIHN SRTKPSHQNI DSMSKAIAQY TEDARLHAVF EQSGESGRSF DYSQSVRITS ESVPEQQITA
YLLKIQRGGF IQPFGCMIAV DEPSFRILGY SENARDMLGI TPQSVPSIDD KLEAFALGAD VRTLFTHSSA LLLEKAFAAR
EISLTNPIWI HSRTSGKPFY GILHRIDVGI VIDLEPARTE DPALSIAGAV QSQKLAVRAI SQLQSLPGGD VKLLCDTVVE
SVRELTRYDR VMVYKFHEDE HGEVVAESKR PDLEPYIGLH YPATDIPQAS RFLFKQNRVR MIVDCHASPV RVVQDEALVQ
PLCLVGSTLR APHGCHAQYM ANMGSIASLV MAVIINGNDE EAVGGRSPMR LWGLVVCHHT SARCIPFPLR YACEFLMQAF
GLQLNMELQL AAQSLEKRVL RTQTLLCDML LRDSPTGIVT QSPSIMDLVK CDGAALYCQG NYYPLGVTPT EAQIRDIVEW
LLAFHGDSTG LSTDSLADAG YPGAALLGDA VCGMAVAYIT EKDFLFWFRS HTGKEIKWGG AKHHPEDKDD GQRMHPRSSF
KAFLEVVKSR SLPWENAEMD AIHSLQLILR DSFKDTEHSN SKAVVDPRVA ELELQGVDEL SSVAREMVRL IETATAPIFA
VDIDGHINGW NAKVSELTGL AVEEAMGKSL VHDLVFKESE ETVDKLLSRA LKGEEDKNVE IKMKTFRPEH QNKAVFVVVN
ACSSKDYTNN IVGVCFVGQD VTGQKIVMDK FINIQGDYKA IVHSPNPLIA PIFASDDNAC CLEWNTAMEK LTGWGRGDVI
GKMLVGEVFG SCCPLKGSDS ITKFMIVLHN ALGGQDTDKF PFSFLDRHGK YIQTFLTANK RVNMDGQIIG AFCFLQIVSP
ELQQALKAQR QQEKTSFARM KELAYISQGV KNPLSGIRFT NSLLEATSLT DEQKQFLETS AACEKQMLKI IRDIDLESIE
DGSLELEKGE FLLGNVMNAV VSQVMLLLRE RTLQLICDIP EEIKTLAVYG DQLRIQQVLA DFLLNIVRYA PSPDGWVEIH
VHPRIKQISD GLTLLHAEFR MVCPGEGLPP ELIQDMFNNS RWVSQEGLGL SMSRKILKVM NGEVQYIREA ERCYFFILLE
LPVTRKNSKK G*