GBrowse Details

Vigan.05G124000.01

Basic Information:
Name: Vigan.05G124000.01
Multiple alignment
Variant Information
Position: Chr05:9981118..9982773 (+ strand)
Length: 1656
Functional Information:
Description: Similar to Uncharacterized protein. [Q0PJK2, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,1.34,0.72,20.77,12.43,0.74,0.21
Automatic updates:
Name: LC485152 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max L66-707 Glyma.03G258700 mRNA for MYB transcription factor, complete cds.
PubMed ID: 32082354 NCBI(pubmed)
Status: Known Variant
Name: LC485153 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max L66-260 Glyma.03G258700 mRNA for truncated MYB transcription factor, complete cds.
PubMed ID: 32082354 NCBI(pubmed)
Status: Known Variant
Name: LC485154 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Cloud Glyma.03G258700 mRNA for truncated MYB transcription factor, complete cds.
PubMed ID: 32082354 NCBI(pubmed)
Status: Known Variant
Name: LC512739 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cv. Williams 82 Glyma.03G258700 mRNA for MYB transcription factor, complete cds.
PubMed ID: 32082354 NCBI(pubmed)
Status: Known Variant
Name: NM_001248891 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB185 (MYB185), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9981118..9981216 (+ strand)
Length: 99
Type: five_prime_UTR
Position: Chr05:9981217..9981349 (+ strand)
Length: 133
Type: CDS
Position: Chr05:9981941..9982653 (+ strand)
Length: 713
Type: CDS
Position: Chr05:9982654..9982773 (+ strand)
Length: 120
Type: three_prime_UTR


>Vigan.05G124000.01
AGAAGCTATG GTGTGCTTCC TCATTACGAG GTAGAGAACC TTCTGGATCT CTCTCCATCC ACCACTTGAA AGTGAGTTTG
GTTTTCTTGT GTGAAGAAGA TGGGAAGAGC TCCTTGTTGC TCCAAAGTAG GGTTGCACAG AGGTCCATGG ACTCCACGAG
AAGATGCTTT GCTCACTAAG TATATTCAAG CTCATGGAGA AGGCCAGTGG AGATCACTGC CAAAAAGAGC TGGTCTTCTC
AGATGCGGAA AAAGTTGCAG ACTGAGATGG ATGAACTATC TGAGACCAGA TATAAAGAGA GGAAACATAA CTCCAGAAGA
AGACGATCTC ATAATTAGAA TGCATTCACT TTTAGGAAAT CGATGGTCCC TCATTGCTGG AAGGTTACCG GGACGAACAG
ATAATGAGAT AAAGAATTAC TGGAATACCC ATCTTAGCAA GAAGCTGAGA AATCAAGGAA CAGATCCTAA GACACACCAC
AAGTTAACCG TACCACCGGA GAAGAAGAAG GGCAAAAAGA AGAACAAGCA AAAGCATGAG AATAAGAAAG GGAGCTCTGA
GAAAACCTTG GTTTATCTAC CAAAAGCCGT GAGGGTTAAG GCTGTGTCAT GTGTGCCTCG AACGGAGAGC ACCTTCACCC
TGGATTCGAA TTCGGGTAGT GCATCGACGA GCCAGGAGAA AGTTCAAAGC CCAGAAGAAG TAGCAAGAGA GGTAAACATG
GTTTGGGGTG TAGGCAACGA AGGAGACCAT GGTGGGGTTG GAATTTTCTT TGGTGAAGAC CACGACCTAG TCAACACCTC
CTCTTACGTG GAATGTCATT CTGATGATGT TCACACTGAT CATGGTACGC TACAAAAGCT CTACGAAGAG TACTTGCAGC
TCTTGAAGGA TGAAGAGAAA CCTGCGGATG AATTAGATTC TTTTGCCCAA TCTTTATTGG TGTAGATGTA GAAATAATGC
TAAACTATAT GCTTGGAAAG TAATAAAATA AAGTTTGCTC TAGCAAGCAT GTGAGCATTG TATTATTATT CATTCCTTCA
TCAGCCTTGA TTAATTAATT CCAAT

>Vigan.05G124000.01
ATGGGAAGAG CTCCTTGTTG CTCCAAAGTA GGGTTGCACA GAGGTCCATG GACTCCACGA GAAGATGCTT TGCTCACTAA
GTATATTCAA GCTCATGGAG AAGGCCAGTG GAGATCACTG CCAAAAAGAG CTGGTCTTCT CAGATGCGGA AAAAGTTGCA
GACTGAGATG GATGAACTAT CTGAGACCAG ATATAAAGAG AGGAAACATA ACTCCAGAAG AAGACGATCT CATAATTAGA
ATGCATTCAC TTTTAGGAAA TCGATGGTCC CTCATTGCTG GAAGGTTACC GGGACGAACA GATAATGAGA TAAAGAATTA
CTGGAATACC CATCTTAGCA AGAAGCTGAG AAATCAAGGA ACAGATCCTA AGACACACCA CAAGTTAACC GTACCACCGG
AGAAGAAGAA GGGCAAAAAG AAGAACAAGC AAAAGCATGA GAATAAGAAA GGGAGCTCTG AGAAAACCTT GGTTTATCTA
CCAAAAGCCG TGAGGGTTAA GGCTGTGTCA TGTGTGCCTC GAACGGAGAG CACCTTCACC CTGGATTCGA ATTCGGGTAG
TGCATCGACG AGCCAGGAGA AAGTTCAAAG CCCAGAAGAA GTAGCAAGAG AGGTAAACAT GGTTTGGGGT GTAGGCAACG
AAGGAGACCA TGGTGGGGTT GGAATTTTCT TTGGTGAAGA CCACGACCTA GTCAACACCT CCTCTTACGT GGAATGTCAT
TCTGATGATG TTCACACTGA TCATGGTACG CTACAAAAGC TCTACGAAGA GTACTTGCAG CTCTTGAAGG ATGAAGAGAA
ACCTGCGGAT GAATTAGATT CTTTTGCCCA ATCTTTATTG GTGTAG

>Vigan.05G124000.01
MGRAPCCSKV GLHRGPWTPR EDALLTKYIQ AHGEGQWRSL PKRAGLLRCG KSCRLRWMNY LRPDIKRGNI TPEEDDLIIR
MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRNQG TDPKTHHKLT VPPEKKKGKK KNKQKHENKK GSSEKTLVYL
PKAVRVKAVS CVPRTESTFT LDSNSGSAST SQEKVQSPEE VAREVNMVWG VGNEGDHGGV GIFFGEDHDL VNTSSYVECH
SDDVHTDHGT LQKLYEEYLQ LLKDEEKPAD ELDSFAQSLL V*