GBrowse Details

Vigan.05G129500.01

Basic Information:
Name: Vigan.05G129500.01
Multiple alignment
Variant Information
Position: Chr05:10487881..10491944 (- strand)
Length: 4064
Functional Information:
Description: Similar to Uncharacterized protein. [A0A022QC35, Mimulus guttatus]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:497.29,194.51,293.66,426.49,335.94,639.78,443.36,245.93
Automatic updates:
Name: NM_001248040 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ubiquitin-conjugating enzyme E2 (LOC100527105), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248403 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305945 (LOC100305945), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248455 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499741 (LOC100499741), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249001 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugation enzyme (LOC547652), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249583 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499824 (LOC100499824), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250581 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499891 (LOC100499891), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254429 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 10-like (LOC100806349), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:10487881..10488324 (- strand)
Length: 444
Type: three_prime_UTR
Position: Chr05:10488325..10488468 (- strand)
Length: 144
Type: CDS
Position: Chr05:10489154..10489258 (- strand)
Length: 105
Type: CDS
Position: Chr05:10490721..10490848 (- strand)
Length: 128
Type: CDS
Position: Chr05:10491717..10491786 (- strand)
Length: 70
Type: CDS
Position: Chr05:10491787..10491944 (- strand)
Length: 158
Type: five_prime_UTR


>Vigan.05G129500.01
TAATTATTGT CTCTTTCCTT ACTTAGTCAT ATCTGCAACT TGGTTTGGTT TTCTCTTCCA CCTTTGTTTC GTTCAAGAGG
GGCTTCTCTC TCTTTCTCTC TCTGCAACGC TTCCTTTTCT TCGTAGATCG AACGCGAATC TTCTTCTGTT CTTTTTCCAT
GGCCTCTAAG CGGATTCTGA AGGAGCTCAA GGACCTCCAG AAAGACCCTC CAACCTCTTG CAGTGCCGGT CCCGTAGCAG
AAGACATGTT TCATTGGCAA GCAACTATAA TGGGACCCCC TGACAGTCCT TATGCTGGGG GTGTTTTTCT AGTCACTATT
CATTTTCCCC CTGATTATCC ATTCAAGCCA CCCAAGGTTG CATTCAGGAC AAAAGTTTTT CACCCAAATA TCAACAGCAA
TGGTAGCATT TGTCTCGATA TCTTAAAGGA GCAGTGGAGC CCTGCCTTGA CAATATCTAA GGTGCTGCTC TCCATTTGCT
CCCTATTGAC GGATCCAAAC CCAGATGATC CCTTGGTGCC TGAAATTGCT CATATGTACA AGACAGACAG GTCCAAGTAT
GAGACAACTG CTAGGAGCTG GACTCAGAAG TATGCAATGG GCTAGTATGT TGCAATGAGG CCTTATATTA AGGATAGGAC
ATGTTCCTTC CATTTGTTAA AAGACATTAA TGTATAATCT ATCTTTCCAT TCCCGCTGTT GACTTATGTC GTGGATAGGT
CTCTTGTTGC CCACATACAT CTGTGAAGAC AATAGGGAGG ATTTTTAGTG TGTTTGTATG AAACTTCTCC TGTGAGTGCT
GGGAAATATC AGTTGCTGAT ATTGTTCACT TGTGCTCACA ATTATTTATC TTTGCATACT ATGATGATTC CTAGTTCCTA
CAACTTACTT GGATTCCTTA CCAATACTTC ACTTCTTTAT GACATTATAG TGATAGCTAT ATACCGAAAC TATATATTTG
TATTATTGAC TATGGAATCA TCTTTTGTTC TGTTTGGTGA AAAGTTGTTT CATGGATACC CTTCTATTAA ATTAACCAAG
TTTTGTTTA

>Vigan.05G129500.01
ATGGCCTCTA AGCGGATTCT GAAGGAGCTC AAGGACCTCC AGAAAGACCC TCCAACCTCT TGCAGTGCCG GTCCCGTAGC
AGAAGACATG TTTCATTGGC AAGCAACTAT AATGGGACCC CCTGACAGTC CTTATGCTGG GGGTGTTTTT CTAGTCACTA
TTCATTTTCC CCCTGATTAT CCATTCAAGC CACCCAAGGT TGCATTCAGG ACAAAAGTTT TTCACCCAAA TATCAACAGC
AATGGTAGCA TTTGTCTCGA TATCTTAAAG GAGCAGTGGA GCCCTGCCTT GACAATATCT AAGGTGCTGC TCTCCATTTG
CTCCCTATTG ACGGATCCAA ACCCAGATGA TCCCTTGGTG CCTGAAATTG CTCATATGTA CAAGACAGAC AGGTCCAAGT
ATGAGACAAC TGCTAGGAGC TGGACTCAGA AGTATGCAAT GGGCTAG

>Vigan.05G129500.01
MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS
NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKYAMG*