GBrowse Details

Vigan.05G132700.01

Basic Information:
Name: Vigan.05G132700.01
Multiple alignment
Variant Information
Position: Chr05:10742348..10748057 (- strand)
Length: 5710
Functional Information:
Description: Similar to Uncharacterized protein. [I1JRU3, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.48,10.11,25.11,7.16,0.08,10.30,0.06,11.09
Arabidopsis thaliana homolog: AT3G04290.1, AT4G28780.1, AT5G33370.1
Automatic updates:
Name: NM_001354877 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase LTL1 (LOC100812344), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:10742348..10742673 (- strand)
Length: 326
Type: three_prime_UTR
Position: Chr05:10742674..10742906 (- strand)
Length: 233
Type: CDS
Position: Chr05:10744362..10744614 (- strand)
Length: 253
Type: CDS
Position: Chr05:10746952..10747194 (- strand)
Length: 243
Type: CDS
Position: Chr05:10747376..10747503 (- strand)
Length: 128
Type: CDS
Position: Chr05:10747646..10747898 (- strand)
Length: 253
Type: CDS
Position: Chr05:10747899..10748057 (- strand)
Length: 159
Type: five_prime_UTR


>Vigan.05G132700.01
GCCTCTCTTT ATTACGAGCG TTATCTCCAT CTGCTTGTGG TAGCAGAAGC TATTTAATTC ACCACATCAA ATATCACAGC
CACTGACCTC TATATAAACC TACCCCTCAA CTTATTACCT TCTTCATACC GAGTTCAGTG TTGTTATTTA CCATTACAAA
TGGACCAAAG GGTTTTTGAT TCTTCTATGT TTCTATGTTT GCTTGTGTTA ATCACATGTA ACAACGTTGT TCTTGTTCCA
CAAGCCGAGG CTCGAGCGTT TTTTGTTTTT GGAGATTCGT TGGTTGATAA TGGCAACAAT AACTACCTAC TCACCACTGC
TCGTGCCGAC GCATACCCTT ATGGCATTGA CTATCCAACT CACAGGGCAA CCGGTCGATT CTCCAACGGC CTCAATATCC
CGGACATTAT CAGTGAACAA ATTGGGTCAG AACCCACGTT GCCGTATCTG AATCCTGCGC TGGATGGAGA GAGGCTACTC
GTCGGGGCAA ATTTTGCTTC TGCTGGAATA GGAATTCTCA ATGACACTGG AATCCAGTTT ATAAACATAA TCCGAATCAG
CAGACAATTA CAGTACTTTG AACAGTATCA ACAGAGGGTG AGTGCACTAA TTGGAGTAGA ACAGGCTCAA AGACTTGTGA
ACCAGGCACT GGTCCTCATA ACATTAGGAG GCAATGATTT TGTTAACAAC TATTTCCTCG TGCCATTTTC TGCAAGATCA
CGTCAATTTG CACTCCCAGA CTATGTCGTC TACCTTATTT CCGAATATCG CAAAATTCTT GTGAGGCTTT ATGAATTGGG
AGCAAGACGA GTTTTGGTGA CAGGAACGGG GCCATTAGGG TGCGTACCTG CAGAATTAGC ACAGCATAGC AGAAATGGGG
AGTGTGCAGC AGATCTGCAA CAAGCTTCTG CATTGTTCAA CCCGCAACTC GTACAGTTGG TGAATCAACT TAACTCTGAA
ATTGGTTCGG CTATCTTCAT TTCGGCTAAT GCCTTCCAAT CCAATATGGA TTTTATCAGT AACCCACAGG CCTACGGTTT
TATCACCTCA AAAGTTGCAT GCTGTGGGCA AGGACGTTTC AATGGGATTG GACTGTGTAC ACCAGTGTCT AACCTGTGTC
CAAACAGGAA TGTGTATGCA TTTTGGGATC CCTTCCATCC AAGTGAGAGA GCAAACAGAT TAATCGTGGA AACATTCATG
ATTGGAGACT CCAAATACAT GAACCCAATG AATCTCAGTA CCATTATGCA GTTGGATTCA AGGACCTGAT TATCATCATC
TTCTTCTTCT TCCTAGGATT GTCACACACA TTCTGCATTA CATTTTGTGC TTATATATAT ATATTTGATT GTTTAAGCTG
TATTGTTACA AATTATTTGA TGCCATGGGA TTGGTACGTT TTCTCTCTGC AAGGCCTGAT TTGAGAGGAG AAATAGGAGA
AGGGTTTGTA TCTTGTTGCC CATTTATGGT TTTGGGTTGA GATAATTTGT GGTTAGAGGT AAGCCCAAAA CATATATGGG
CTTCAAACTT ATAGTGTATA ATAAACTTAG GTATCTATAA TGTATTACCA CTTCAAAAAA CTATTCCATG CAGAC

>Vigan.05G132700.01
ATGGACCAAA GGGTTTTTGA TTCTTCTATG TTTCTATGTT TGCTTGTGTT AATCACATGT AACAACGTTG TTCTTGTTCC
ACAAGCCGAG GCTCGAGCGT TTTTTGTTTT TGGAGATTCG TTGGTTGATA ATGGCAACAA TAACTACCTA CTCACCACTG
CTCGTGCCGA CGCATACCCT TATGGCATTG ACTATCCAAC TCACAGGGCA ACCGGTCGAT TCTCCAACGG CCTCAATATC
CCGGACATTA TCAGTGAACA AATTGGGTCA GAACCCACGT TGCCGTATCT GAATCCTGCG CTGGATGGAG AGAGGCTACT
CGTCGGGGCA AATTTTGCTT CTGCTGGAAT AGGAATTCTC AATGACACTG GAATCCAGTT TATAAACATA ATCCGAATCA
GCAGACAATT ACAGTACTTT GAACAGTATC AACAGAGGGT GAGTGCACTA ATTGGAGTAG AACAGGCTCA AAGACTTGTG
AACCAGGCAC TGGTCCTCAT AACATTAGGA GGCAATGATT TTGTTAACAA CTATTTCCTC GTGCCATTTT CTGCAAGATC
ACGTCAATTT GCACTCCCAG ACTATGTCGT CTACCTTATT TCCGAATATC GCAAAATTCT TGTGAGGCTT TATGAATTGG
GAGCAAGACG AGTTTTGGTG ACAGGAACGG GGCCATTAGG GTGCGTACCT GCAGAATTAG CACAGCATAG CAGAAATGGG
GAGTGTGCAG CAGATCTGCA ACAAGCTTCT GCATTGTTCA ACCCGCAACT CGTACAGTTG GTGAATCAAC TTAACTCTGA
AATTGGTTCG GCTATCTTCA TTTCGGCTAA TGCCTTCCAA TCCAATATGG ATTTTATCAG TAACCCACAG GCCTACGGTT
TTATCACCTC AAAAGTTGCA TGCTGTGGGC AAGGACGTTT CAATGGGATT GGACTGTGTA CACCAGTGTC TAACCTGTGT
CCAAACAGGA ATGTGTATGC ATTTTGGGAT CCCTTCCATC CAAGTGAGAG AGCAAACAGA TTAATCGTGG AAACATTCAT
GATTGGAGAC TCCAAATACA TGAACCCAAT GAATCTCAGT ACCATTATGC AGTTGGATTC AAGGACCTGA 

>Vigan.05G132700.01
MDQRVFDSSM FLCLLVLITC NNVVLVPQAE ARAFFVFGDS LVDNGNNNYL LTTARADAYP YGIDYPTHRA TGRFSNGLNI
PDIISEQIGS EPTLPYLNPA LDGERLLVGA NFASAGIGIL NDTGIQFINI IRISRQLQYF EQYQQRVSAL IGVEQAQRLV
NQALVLITLG GNDFVNNYFL VPFSARSRQF ALPDYVVYLI SEYRKILVRL YELGARRVLV TGTGPLGCVP AELAQHSRNG
ECAADLQQAS ALFNPQLVQL VNQLNSEIGS AIFISANAFQ SNMDFISNPQ AYGFITSKVA CCGQGRFNGI GLCTPVSNLC
PNRNVYAFWD PFHPSERANR LIVETFMIGD SKYMNPMNLS TIMQLDSRT*