GBrowse Details

Vigan.05G134000.01

Basic Information:
Name: Vigan.05G134000.01
Multiple alignment
Variant Information
Position: Chr05:10878799..10883014 (+ strand)
Length: 4216
Functional Information:
Description: Similar to Serine/threonine-protein phosphatase. [V7BRL3, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:144.16,245.30,46.30,82.34,113.05,71.37,412.88,75.63
Arabidopsis thaliana homolog: AT1G64040.1, AT2G29400.1, AT2G39840.1, AT3G46820.1, AT4G11240.1, AT5G43380.1, AT5G59160.1
Automatic updates:
Name: NM_001254636 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100799218), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255490 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100816262), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:10878799..10879089 (+ strand)
Length: 291
Type: five_prime_UTR
Position: Chr05:10879090..10879264 (+ strand)
Length: 175
Type: CDS
Position: Chr05:10880998..10881557 (+ strand)
Length: 560
Type: CDS
Position: Chr05:10881912..10882133 (+ strand)
Length: 222
Type: CDS
Position: Chr05:10882712..10882747 (+ strand)
Length: 36
Type: CDS
Position: Chr05:10882748..10883014 (+ strand)
Length: 267
Type: three_prime_UTR


>Vigan.05G134000.01
GGCCGAGTCT GTGGAAGAAG GAATTATGAT TTTGGTATTT TTTTGAATAA AAGAAAGGAA GAAAGTGAAA CCCTCTCCTT
TTCTCCGAAA GGAATGCGGA AAATCCTGAG GGGCTGCAAA ACGACAACCC CCTGCGTTCA AAACGACGAC AACTCCCACC
ACTCCACGAT TGCGGTGTTG AGTTGAGGCA TGTTATTCGC TCACTCCTTC AACTCAAACT CCTACTGTAC TTGTTCTTCT
TCGCATCATC GCATCGAATA GAGACGTTGA CTTTGAAGGA AGAAGAAGAG AATGGAGCAA TCGGTTTTGG ATGACATAAT
CAGTCGTCTC CTCGAAGTTC GTACCCGACC CGGGAAGCAG GTTCAGCTAT CGGAGTCCGA GATCCGTCAA CTCTGCGTCG
TTTCCAGAGA CATTTTCTTG CAACAACCTA ATTTATTGGA GCTCGAAGCG CCTATTAAGA TTTGTGGTGA TGTACATGGC
CAATATTCTG ATCTCTTAAG GCTTTTTGAG TACGGTGGAT TACCTCCTGA AGCCAACTAC TTGTTTCTGG GGGATTATGT
GGATCGAGGG AAACAGAGTT TAGAAACAAT TTGCCTTCTC CTTGCTTATA AAATAAAATA TCCTGAGAAC TTTTTCCTGT
TAAGGGGAAA CCATGAATGT GCTTCTATAA ATCGGATATA TGGATTTTAT GATGAGTGCA AGAGAAGGTT CAATGTAAGG
TTATGGAAGA CATTTACAGA GTGCTTCAAT TGCCTGCCCG TGGCAGCCCT TGTTGATGAA AAGATTTTAT GTATGCACGG
AGGACTTTCT CCTGACTTAC TTAATTTGGA TCAGATTCGA AATATACAGC GGCCCACAGA TGTTCCTGAT ACAGGTTTGC
TTTGTGATCT CCTTTGGTCT GACCCAAGCA AAGAAGTTCA AGAATGGGGA ATGAATGATA GAGGAGTTTC ATATACATTT
GGTGCTGATA AGGTCTCAGA GTTTCTTCAG AAACATGATC TTGATCTTGT TTGTCGTGCA CATCAGGTTG TGGAAGATGG
ATACGAGTTC TTTGCTAATC GACAGCTTGT AACAATATTT TCAGCACCTA ATTATTGTGG GGAGTTTGAC AATGCCGGTG
CTATGATGAG TGTTGACGAG ACACTAATGT GCTCTTTCCA AATATTAAAG CCAGCTGATA AAAAAACAAA GCACAATTTT
GGAAGTACTA CCACTGCTAA GCCTGGAAAC TCCCCAGCAG GTGTAAAGTT TGGGCTTGAG AAAGTGCAAG TTTGCGCTGA
ATAGCAGAAC CATACCATGT AGGCAGATTT TACCTGCTGT GTGGGTTATG AATCTTATTG CTTGGACTTG GAAGCACCCT
ATGAGAAGGG TCATGACATC AGATTACAAA GTGGGAATCA GTACCGCCCA CAAAGGGTGT GCCCGTGGGG ACACTTGGTG
TTTGGCCAAA ACTACCTAAA CTGTAATGTC CCTAATCTGG CACTCAATTC AAGCGATGGT ATCACATTAC TTAGCACGGA
CACCTGGTGT TTGACCAAAA TTAGCTAAAC T

>Vigan.05G134000.01
ATGGAGCAAT CGGTTTTGGA TGACATAATC AGTCGTCTCC TCGAAGTTCG TACCCGACCC GGGAAGCAGG TTCAGCTATC
GGAGTCCGAG ATCCGTCAAC TCTGCGTCGT TTCCAGAGAC ATTTTCTTGC AACAACCTAA TTTATTGGAG CTCGAAGCGC
CTATTAAGAT TTGTGGTGAT GTACATGGCC AATATTCTGA TCTCTTAAGG CTTTTTGAGT ACGGTGGATT ACCTCCTGAA
GCCAACTACT TGTTTCTGGG GGATTATGTG GATCGAGGGA AACAGAGTTT AGAAACAATT TGCCTTCTCC TTGCTTATAA
AATAAAATAT CCTGAGAACT TTTTCCTGTT AAGGGGAAAC CATGAATGTG CTTCTATAAA TCGGATATAT GGATTTTATG
ATGAGTGCAA GAGAAGGTTC AATGTAAGGT TATGGAAGAC ATTTACAGAG TGCTTCAATT GCCTGCCCGT GGCAGCCCTT
GTTGATGAAA AGATTTTATG TATGCACGGA GGACTTTCTC CTGACTTACT TAATTTGGAT CAGATTCGAA ATATACAGCG
GCCCACAGAT GTTCCTGATA CAGGTTTGCT TTGTGATCTC CTTTGGTCTG ACCCAAGCAA AGAAGTTCAA GAATGGGGAA
TGAATGATAG AGGAGTTTCA TATACATTTG GTGCTGATAA GGTCTCAGAG TTTCTTCAGA AACATGATCT TGATCTTGTT
TGTCGTGCAC ATCAGGTTGT GGAAGATGGA TACGAGTTCT TTGCTAATCG ACAGCTTGTA ACAATATTTT CAGCACCTAA
TTATTGTGGG GAGTTTGACA ATGCCGGTGC TATGATGAGT GTTGACGAGA CACTAATGTG CTCTTTCCAA ATATTAAAGC
CAGCTGATAA AAAAACAAAG CACAATTTTG GAAGTACTAC CACTGCTAAG CCTGGAAACT CCCCAGCAGG TGTAAAGTTT
GGGCTTGAGA AAGTGCAAGT TTGCGCTGAA TAG

>Vigan.05G134000.01
MEQSVLDDII SRLLEVRTRP GKQVQLSESE IRQLCVVSRD IFLQQPNLLE LEAPIKICGD VHGQYSDLLR LFEYGGLPPE
ANYLFLGDYV DRGKQSLETI CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF NVRLWKTFTE CFNCLPVAAL
VDEKILCMHG GLSPDLLNLD QIRNIQRPTD VPDTGLLCDL LWSDPSKEVQ EWGMNDRGVS YTFGADKVSE FLQKHDLDLV
CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPADKKTK HNFGSTTTAK PGNSPAGVKF
GLEKVQVCAE *