GBrowse Details

Vigan.05G136400.01

Basic Information:
Name: Vigan.05G136400.01
Multiple alignment
Variant Information
Position: Chr05:11093743..11096424 (+ strand)
Length: 2682
Functional Information:
Description: Similar to Profilin family protein. [XP_007040899.1, Theobroma cacao]
GO: Biological Process: actin cytoskeleton organization (GO:0030036)
Molecular Function: actin binding (GO:0003779)
InterPro: Profilin (IPR005455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.50,11.21,21.63,13.43,18.68,19.79,16.06,14.06
Arabidopsis thaliana homolog: AT4G19400.1
Automatic updates:
Name: NM_001254193 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100802211 (LOC100802211), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11093743..11093749 (+ strand)
Length: 7
Type: five_prime_UTR
Position: Chr05:11093750..11093813 (+ strand)
Length: 64
Type: CDS
Position: Chr05:11093954..11094023 (+ strand)
Length: 70
Type: CDS
Position: Chr05:11095405..11095514 (+ strand)
Length: 110
Type: CDS
Position: Chr05:11095855..11095969 (+ strand)
Length: 115
Type: CDS
Position: Chr05:11096057..11096141 (+ strand)
Length: 85
Type: CDS
Position: Chr05:11096142..11096424 (+ strand)
Length: 283
Type: three_prime_UTR


>Vigan.05G136400.01
CGACTCAATG GATTGGGCGT TCGTGCATAA AACATGGGAT AAGTGGGCTT CTACCAACGT TGGGTATTCT GGTCATCCGT
TAAAAGCTGC TTTGCTAATC AACCATGACC CCACTGGACC ATCTCGATTG TTATCTACCA TTGCTGCACA AGAAGGAATA
AAAGCTAATC CCATTGAATT GAGTAACTTT ATGGACTTCA TCAAACAAAA TAAGCTCCAT ACAGAGCTCT TCGTTATTGG
ATCCAATCAG TACTTGGTCA CAACAATTCA TGAGAACTGG TTTAGTGCAA GGTGTATAAA CACGTCAAAG CCCGCTGGTG
AAGGTGTTAT TGTTATACAA ACAGCAGCAT ACATCTTGGT TGCTCTGTAT GAAGGTTCCA TCGGTCCAGC ATCTCGTGCT
ATGGCAGCTG CTGATCAGTT AACTTGGCAA TTAGGACGAA AAAATCTTTA AACTGGTCCT GCAGATCTGT AGCATCCACT
AACCACAAGG CTAATCTTTT CTGTTTTCAC TCCAATTTTT TCTCAGATGA TTGCACCCAT GTATCTTGGT GATGAAGCCA
TTGCCATTAC ACAACCACAT AGATGACAGT GTACGAGAGA GGTCTTAACC CTTGTTGTGT ATTATTGGTT CATCTCAACC
ATTAATATTA AATTAAGAAC AACGAATATT CATGTTTTAT ATAGGCTTGA ACAAAATTAT TTTAAATATC AAATGATTGC
TACAGTTGAT TTCA

>Vigan.05G136400.01
ATGGATTGGG CGTTCGTGCA TAAAACATGG GATAAGTGGG CTTCTACCAA CGTTGGGTAT TCTGGTCATC CGTTAAAAGC
TGCTTTGCTA ATCAACCATG ACCCCACTGG ACCATCTCGA TTGTTATCTA CCATTGCTGC ACAAGAAGGA ATAAAAGCTA
ATCCCATTGA ATTGAGTAAC TTTATGGACT TCATCAAACA AAATAAGCTC CATACAGAGC TCTTCGTTAT TGGATCCAAT
CAGTACTTGG TCACAACAAT TCATGAGAAC TGGTTTAGTG CAAGGTGTAT AAACACGTCA AAGCCCGCTG GTGAAGGTGT
TATTGTTATA CAAACAGCAG CATACATCTT GGTTGCTCTG TATGAAGGTT CCATCGGTCC AGCATCTCGT GCTATGGCAG
CTGCTGATCA GTTAACTTGG CAATTAGGAC GAAAAAATCT TTAA

>Vigan.05G136400.01
MDWAFVHKTW DKWASTNVGY SGHPLKAALL INHDPTGPSR LLSTIAAQEG IKANPIELSN FMDFIKQNKL HTELFVIGSN
QYLVTTIHEN WFSARCINTS KPAGEGVIVI QTAAYILVAL YEGSIGPASR AMAAADQLTW QLGRKNL*