GBrowse Details

Vigan.05G138400.01

Basic Information:
Name: Vigan.05G138400.01
Multiple alignment
Variant Information
Position: Chr05:11287068..11298415 (+ strand)
Length: 11348
Functional Information:
Description: Similar to Uncharacterized protein. [I1JRN5, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
Ankyrin repeat (IPR002110)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.49,15.20,7.80,7.28,83.37,15.91,15.80,9.07
Arabidopsis thaliana homolog: AT3G04710.1
Automatic updates:
Name: NM_001255176 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ankyrin-1-like (LOC100793914), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11287068..11287146 (+ strand)
Length: 79
Type: five_prime_UTR
Position: Chr05:11287147..11287177 (+ strand)
Length: 31
Type: CDS
Position: Chr05:11287286..11287348 (+ strand)
Length: 63
Type: CDS
Position: Chr05:11287437..11287607 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11287702..11287833 (+ strand)
Length: 132
Type: CDS
Position: Chr05:11288214..11288353 (+ strand)
Length: 140
Type: CDS
Position: Chr05:11288696..11288782 (+ strand)
Length: 87
Type: CDS
Position: Chr05:11294679..11294804 (+ strand)
Length: 126
Type: CDS
Position: Chr05:11295009..11295161 (+ strand)
Length: 153
Type: CDS
Position: Chr05:11295658..11295729 (+ strand)
Length: 72
Type: CDS
Position: Chr05:11296947..11297048 (+ strand)
Length: 102
Type: CDS
Position: Chr05:11297286..11297456 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11297545..11297624 (+ strand)
Length: 80
Type: CDS
Position: Chr05:11297998..11298052 (+ strand)
Length: 55
Type: CDS
Position: Chr05:11298053..11298415 (+ strand)
Length: 363
Type: three_prime_UTR


>Vigan.05G138400.01
GAGAAAACAG TGAGACTGTA GGGTATTGTA AAACCCTCTC ATTTTCGAGT TCTTTCGCAC TGCTCTCTAC TCCATTGCTA
TGGCTTCCGA CGCTTCCGAC GCACTTGCAG TGAGGCAAAA AGTTCAATTG TTTCTTAATG CTGCTCGAAC TGGATCGATT
GATCTCTTAA AGAAGTTGGC GTTGCAGCTG GACGAGGGAA ATGATTTGGC GAAATCGGTG GAAGCTATAA AGGACGCGAA
CAAGCGAGGA GCACTGCATT TTGCCGCGCG TGAAGGCCAA ACCGCTGTTT GCGAGTACCT CTTAACCGAT TTGAACCTCC
CTGTTGATTC TCCAGATGAT GATGGAGAGA CCGCCCTCAT TCATGCTGCT CGTCAGGGAC ATACCGGCAC TGCTAAATAT
CTGATTGACT ATGGTGCCGA TCCCACTATA GCTAGCAATT TAGGGGCTAC GGCCTTACAC CATGCTGCAG GGATAGGAGA
TACTGAACTG CTCAAGTACT TGCTCTCCAG GGGATTTAGT CCTGATCTAG AAAGTGATTC AGGGACGCCT TTGGTTTGGG
CTGCTGGTCA TGCCCAACCA GATGCGGTCA ATGTACTGTT GGAACATGGT GCAAATCCTA ATGCTGATAC TGATGATGGT
ATTACTCCAC TTCTTTCGGC TGTGGCAGCT GGTTCTCTGG CATGTTTAGA GATATTAATT CAGGCAGGTG CTAAAGTAAA
TATAAGTGCA GGTGGAGCAA CACCTTTGCA TATCGCAGCT GACAATGGAA GTCTAGAACT AATAAATTGC TTGTTGAAAG
CTGGAGCTGA TCCTAATGTC TCTGATGAGG ATGGGGTCAA GCCAATACAG GTTGCTGCTG CAAGGGGCTT TGTAGGTGCA
GTTGAGGTAT TGTTTCCTTT GACATCCAAA GTGGATACTT TTCCAACTTG GACTGTTAGT GGGATACTTG AGCATATGCA
ATCTGAAACT AACAAGCAAC AGGATGAATT GGTAAATGCC AAAGAAACTA ATCAGGCCAA GGATGCTGTT TTTTCGGAGA
AAAATATTCT CGAGGTGGCT CCTGAAGCCA AAAAGAGAGC AGCAGAAGCA AAGTCAAGAG GGGATGAGGC CTTTCGAAGG
AAAGACTTTC AAATGGCTAT GGATTCTTAT ACGCAAGCAA TTGATCTGGA TCCCTCTGAT GCTACTTTGC TATCCAATAG
AAGTCTCTGC TGGATTAGGT TGGGCCAAGC TGAGCATGCT TTAGCTGATG CAAAGGCCTG TAGAGCTTTA AGACCAGATT
GGGCAAAAGC TTGTTATAGG GAAGGCGCAG CTCTGCGTGT GTTGCAGAAA TTTGATGAAG CTGCAAATGC TTTTTATGAG
GGAGTAATGC TTGATCCTGA AAATCAGGAG CTTGTAAATG CCTTCAGGGA AGCTGTGGAG GCTGGGAAGA AATTTCATGG
AACAGCTGAA AAGACTTCAT AGTTGGGCCT TCTATTTATC CCGCATTGGT GTACGTGTTT TATTTGACGA GGCACGGTCC
AAAAGAGTCA TTAGTTAGAA AGGTTATGCA TATTAGAAAT TTGGCGCAAT ATGAAATGCG GGCAAATTGC TTGTCAAATT
TCTTTCGCCA ATTTCTAGTT TTGGTGATGT TGTATGATTG GTTTTATAGG TTAATTGTCC CATACTGGCA TAGGCTTGTT
TGTTTTAAAA TTCAGGAAAA AAAATGATTT TGATATAATT AATTCGGATA GTGTCTATTG ATAAGTGATA TTAGCGATAC
GCATAAAAAA AATTCTCGTT GAGCATTGTC TGAAAGATTA TTGTTTAAGT AATGGTAAAA TGGAT

>Vigan.05G138400.01
ATGGCTTCCG ACGCTTCCGA CGCACTTGCA GTGAGGCAAA AAGTTCAATT GTTTCTTAAT GCTGCTCGAA CTGGATCGAT
TGATCTCTTA AAGAAGTTGG CGTTGCAGCT GGACGAGGGA AATGATTTGG CGAAATCGGT GGAAGCTATA AAGGACGCGA
ACAAGCGAGG AGCACTGCAT TTTGCCGCGC GTGAAGGCCA AACCGCTGTT TGCGAGTACC TCTTAACCGA TTTGAACCTC
CCTGTTGATT CTCCAGATGA TGATGGAGAG ACCGCCCTCA TTCATGCTGC TCGTCAGGGA CATACCGGCA CTGCTAAATA
TCTGATTGAC TATGGTGCCG ATCCCACTAT AGCTAGCAAT TTAGGGGCTA CGGCCTTACA CCATGCTGCA GGGATAGGAG
ATACTGAACT GCTCAAGTAC TTGCTCTCCA GGGGATTTAG TCCTGATCTA GAAAGTGATT CAGGGACGCC TTTGGTTTGG
GCTGCTGGTC ATGCCCAACC AGATGCGGTC AATGTACTGT TGGAACATGG TGCAAATCCT AATGCTGATA CTGATGATGG
TATTACTCCA CTTCTTTCGG CTGTGGCAGC TGGTTCTCTG GCATGTTTAG AGATATTAAT TCAGGCAGGT GCTAAAGTAA
ATATAAGTGC AGGTGGAGCA ACACCTTTGC ATATCGCAGC TGACAATGGA AGTCTAGAAC TAATAAATTG CTTGTTGAAA
GCTGGAGCTG ATCCTAATGT CTCTGATGAG GATGGGGTCA AGCCAATACA GGTTGCTGCT GCAAGGGGCT TTGTAGGTGC
AGTTGAGGTA TTGTTTCCTT TGACATCCAA AGTGGATACT TTTCCAACTT GGACTGTTAG TGGGATACTT GAGCATATGC
AATCTGAAAC TAACAAGCAA CAGGATGAAT TGGTAAATGC CAAAGAAACT AATCAGGCCA AGGATGCTGT TTTTTCGGAG
AAAAATATTC TCGAGGTGGC TCCTGAAGCC AAAAAGAGAG CAGCAGAAGC AAAGTCAAGA GGGGATGAGG CCTTTCGAAG
GAAAGACTTT CAAATGGCTA TGGATTCTTA TACGCAAGCA ATTGATCTGG ATCCCTCTGA TGCTACTTTG CTATCCAATA
GAAGTCTCTG CTGGATTAGG TTGGGCCAAG CTGAGCATGC TTTAGCTGAT GCAAAGGCCT GTAGAGCTTT AAGACCAGAT
TGGGCAAAAG CTTGTTATAG GGAAGGCGCA GCTCTGCGTG TGTTGCAGAA ATTTGATGAA GCTGCAAATG CTTTTTATGA
GGGAGTAATG CTTGATCCTG AAAATCAGGA GCTTGTAAAT GCCTTCAGGG AAGCTGTGGA GGCTGGGAAG AAATTTCATG
GAACAGCTGA AAAGACTTCA TAG

>Vigan.05G138400.01
MASDASDALA VRQKVQLFLN AARTGSIDLL KKLALQLDEG NDLAKSVEAI KDANKRGALH FAAREGQTAV CEYLLTDLNL
PVDSPDDDGE TALIHAARQG HTGTAKYLID YGADPTIASN LGATALHHAA GIGDTELLKY LLSRGFSPDL ESDSGTPLVW
AAGHAQPDAV NVLLEHGANP NADTDDGITP LLSAVAAGSL ACLEILIQAG AKVNISAGGA TPLHIAADNG SLELINCLLK
AGADPNVSDE DGVKPIQVAA ARGFVGAVEV LFPLTSKVDT FPTWTVSGIL EHMQSETNKQ QDELVNAKET NQAKDAVFSE
KNILEVAPEA KKRAAEAKSR GDEAFRRKDF QMAMDSYTQA IDLDPSDATL LSNRSLCWIR LGQAEHALAD AKACRALRPD
WAKACYREGA ALRVLQKFDE AANAFYEGVM LDPENQELVN AFREAVEAGK KFHGTAEKTS *