GBrowse Details

Vigan.05G139500.01

Basic Information:
Name: Vigan.05G139500.01
Multiple alignment
Variant Information
Position: Chr05:11393291..11394520 (+ strand)
Length: 1230
Functional Information:
Description: Similar to Uncharacterized protein. [I1NC91, Glycine max]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.04,2.05,7.90,0.04,0.00,0.06,1.08
Automatic updates:
Name: NM_001249034 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500550 (LOC100500550), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11393291..11393425 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr05:11393426..11393501 (+ strand)
Length: 76
Type: CDS
Position: Chr05:11393661..11393818 (+ strand)
Length: 158
Type: CDS
Position: Chr05:11393938..11394018 (+ strand)
Length: 81
Type: CDS
Position: Chr05:11394098..11394232 (+ strand)
Length: 135
Type: CDS
Position: Chr05:11394233..11394520 (+ strand)
Length: 288
Type: three_prime_UTR


>Vigan.05G139500.01
AAAATAAGGT ATGAAGGTAC CATATATATA TATATATGGC ACGAGTGCTC CTTCGTCTCT GCATAAAATG AGTTTGTATT
GTGGTGAAAG TTAGTTAGAA AATACCGTAT TTGTGTATCA TTACAGAGAG TGAGCATGAA GGAGGCCTTG AGGGAAGAAC
AGATTGGAGA GTTTTTGGAA GCCTTTTGTC TCTTTGACAA AGATGGAGAT GGCAGAATAA ACATCGAAGA ATTAGGCACT
GCGATTCGCT CACTAGATGA AAATCCAACG CTGGAGGAGT TGCAAATCAT GATGAGTGAA GTGGATACAG ACGGCAACGG
AACCATAGAA TTCGGGGAAT TCTTGAATCT CATGGCCAGA AAAATGAAGG AAAGTGAAGC AGAAGAGGAA CTGAAGGAAG
CATTCAGAGT GTTTGACAAA GATCAAGACG GTTATATATC GGCGAGTGAG TTGAGGTCTG TAATGAGGAC CATTGGAGAG
AAGGTGACAG ACGAAGAAGT GGCACAGATG GTGAAAGAGG CTGATTTAGA TGGTGACGGT CTCGTTGATT ATGAGGAGTT
TGTGAGAATG ATGTTGGCTG CATAATCACA TCAACCAAAA ATACAGAAAA ATATATATAA TTTTATGTTT GGTTAGTATT
AATTCCTGGA CAGTAAATGC ACTTCTTTCA TTTTCTATTG CATGCCTGGT AAGTTATCGT GTTGACAAAG AGGACAGTAG
ATTTGAGAAT GGAATTGACA AGATGATAAT TTCTGACCCT GCAACTCTAA AGTCATCCTA AACGTGTCAC GCAAAATTAA
GGTGAAAATT TCTCATTTTT ATTCATCAAT AAGATCCTGA ATTTCAACTA ATGAAACTTG CTTTGACCTC TTT

>Vigan.05G139500.01
ATGAAGGAGG CCTTGAGGGA AGAACAGATT GGAGAGTTTT TGGAAGCCTT TTGTCTCTTT GACAAAGATG GAGATGGCAG
AATAAACATC GAAGAATTAG GCACTGCGAT TCGCTCACTA GATGAAAATC CAACGCTGGA GGAGTTGCAA ATCATGATGA
GTGAAGTGGA TACAGACGGC AACGGAACCA TAGAATTCGG GGAATTCTTG AATCTCATGG CCAGAAAAAT GAAGGAAAGT
GAAGCAGAAG AGGAACTGAA GGAAGCATTC AGAGTGTTTG ACAAAGATCA AGACGGTTAT ATATCGGCGA GTGAGTTGAG
GTCTGTAATG AGGACCATTG GAGAGAAGGT GACAGACGAA GAAGTGGCAC AGATGGTGAA AGAGGCTGAT TTAGATGGTG
ACGGTCTCGT TGATTATGAG GAGTTTGTGA GAATGATGTT GGCTGCATAA 

>Vigan.05G139500.01
MKEALREEQI GEFLEAFCLF DKDGDGRINI EELGTAIRSL DENPTLEELQ IMMSEVDTDG NGTIEFGEFL NLMARKMKES
EAEEELKEAF RVFDKDQDGY ISASELRSVM RTIGEKVTDE EVAQMVKEAD LDGDGLVDYE EFVRMMLAA*