GBrowse Details

Vigan.05G140700.01

Basic Information:
Name: Vigan.05G140700.01
Multiple alignment
Variant Information
Position: Chr05:11485765..11490418 (+ strand)
Length: 4654
Functional Information:
Description: Similar to Uncharacterized protein. [I1JRL7, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.13,40.47,25.45,28.04,44.11,35.94,37.09,27.97
Arabidopsis thaliana homolog: AT3G04830.1
Automatic updates:
Name: NM_001255446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ER membrane protein complex subunit 2-like (LOC100796542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11485765..11485933 (+ strand)
Length: 169
Type: five_prime_UTR
Position: Chr05:11485934..11486120 (+ strand)
Length: 187
Type: CDS
Position: Chr05:11486327..11486391 (+ strand)
Length: 65
Type: CDS
Position: Chr05:11487081..11487129 (+ strand)
Length: 49
Type: CDS
Position: Chr05:11488269..11488363 (+ strand)
Length: 95
Type: CDS
Position: Chr05:11488593..11488678 (+ strand)
Length: 86
Type: CDS
Position: Chr05:11488786..11488845 (+ strand)
Length: 60
Type: CDS
Position: Chr05:11488950..11489031 (+ strand)
Length: 82
Type: CDS
Position: Chr05:11489222..11489335 (+ strand)
Length: 114
Type: CDS
Position: Chr05:11489610..11489780 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11489781..11490418 (+ strand)
Length: 638
Type: three_prime_UTR


>Vigan.05G140700.01
TTCTGAGGCG GAACCTGGAG TGAAAGTGCG ATCCCACTGT ATTTCATCTC GTCTCACTCC GGGTGTGTAT TTTCAACGAC
AGAGAGACAG CGATCGATAT TTGCAGCAAC AGATCGAAAA TCTGTTTATC GATTTGTTGG ATCTGCGTTT GTGAATTGTG
GGAAAGAAGA TGGTTACCAA AACAGAGGAG ACTCAATTGA ACAGGCTTGA AAATCAGGTC GACAACGGCG GCGGCGGCGC
CTGGGACTAC CTCTGCCTTG TCAGAAAGCT CAAGGTTCGC CGTTCCCAGA AGGTTCTGAA GCATGGCCTC TCCATCTTGA
ACGACCCCAA ACAACGATCC TCTCTAGGCG CCGATGAATG GACCTTGTAC GAACAGGTTG CAGTTGCTGC TATGGATTGT
CAATGTCTCG ACGTTGCCAA GGACTGTACA AAGGTTCTTC GGAAGAGATT CCCAGATAGT AAAAGAGTTG GTAGGCTGGA
GGCAATGTTG TTTGAAGCAA AAGGATCCTG GGATTTGGCA GAAAAGGCTT ACGCAAGCCT TTTGGAGGAC AATCCTCTTG
ACCAAGTCAT CCATAAGAGG AGGGTGGCAA TGGCAAAGGC CCAAGGCAAC ATTTCTGTGG CTATTGACTG GCTTAATAAA
TATCTAGAAA CATTCATGGC AGATCATGAT GCATGGAGAG AACTGGCTGA AATATACGTT TCCCTGCAAA TGTATAAACA
AGCAGCATTT TGTTACGAGG AGTTGATATT ATCTCAACCT ACTGTTCCAC TATACCATTT AGCATATGCT GATGTGCTTT
ATACGCTTGG TGGATTAGAA AACCTCCAAA CTGCCAAGAA ATACTATGCG TCTACTATTG ATTTGACTGG AGGCAAAAAC
ACCAGAGCGC TCTTTGGGAT ATGCCTGTGC GCTTCTGCTA TTACGCAGCT TACGAAAGGG AAAAGCAAGG AGGAGAAAGA
AGGGTCACAG TTACAATCTC TAGCGGCCAA AGTATTGGAG AAAGATTACA AACAGAGAGC TCCGGACAAG CTTCCTCAAC
TTACAACTGC CTTAAAGAGT TTAACATTGT CATCATGATG CAGCGTCTCT TAAAGATTAT TATTTGATCA CTTTTTGAAA
TTTTCTAAGA TTGTTGCCAG CTTGAATTAA CGCACTTAGA TTTTCTGAGT CATTTTCTTC TCAATATTAA AATGAAAATT
CTTAACTTTC TGCAGTTTAC CTTACATAAT GAACTATTTA TTGAAAGACA TTTAAAGTTT CAGATGGCCT GGATCCAAAG
GTATTGTCAT AGCTTTGAGG ATGCATAAGA TGGGGGCATG ATTTGTTTTT GACATCCTTT TGCCACTTAT TATTTTCGGT
GGCTATACAA ATTAAGTTAA AATATTAATC TCCCTCCTTG TTTAATCATT TACGTTAGTG TAACATTATG ATTTGATGAT
GTAGCTCGTT GTACTGTTAA TGGATCCCAG TCACACAGTT TGGGGCAGCA GAATTTTGCA CTGCTCTGGC ATTGGAGAAA
GTGACAACTC AATCCTATTT TTGGTATCAA ATATTTGTTC CTTCGAGGTC GTGCTCGCTT GGATTAATTT ATTTTGAAGA
TTTATTTCGT AAATTTTATA TTTAGATCTT GAAATATAAA TATAGGAATA TCATGTCACT TTTATGAATT TAATTCAAGT
TTATTCGTCA AATTAAGGTT CATGTGGTAA AATATA

>Vigan.05G140700.01
ATGGTTACCA AAACAGAGGA GACTCAATTG AACAGGCTTG AAAATCAGGT CGACAACGGC GGCGGCGGCG CCTGGGACTA
CCTCTGCCTT GTCAGAAAGC TCAAGGTTCG CCGTTCCCAG AAGGTTCTGA AGCATGGCCT CTCCATCTTG AACGACCCCA
AACAACGATC CTCTCTAGGC GCCGATGAAT GGACCTTGTA CGAACAGGTT GCAGTTGCTG CTATGGATTG TCAATGTCTC
GACGTTGCCA AGGACTGTAC AAAGGTTCTT CGGAAGAGAT TCCCAGATAG TAAAAGAGTT GGTAGGCTGG AGGCAATGTT
GTTTGAAGCA AAAGGATCCT GGGATTTGGC AGAAAAGGCT TACGCAAGCC TTTTGGAGGA CAATCCTCTT GACCAAGTCA
TCCATAAGAG GAGGGTGGCA ATGGCAAAGG CCCAAGGCAA CATTTCTGTG GCTATTGACT GGCTTAATAA ATATCTAGAA
ACATTCATGG CAGATCATGA TGCATGGAGA GAACTGGCTG AAATATACGT TTCCCTGCAA ATGTATAAAC AAGCAGCATT
TTGTTACGAG GAGTTGATAT TATCTCAACC TACTGTTCCA CTATACCATT TAGCATATGC TGATGTGCTT TATACGCTTG
GTGGATTAGA AAACCTCCAA ACTGCCAAGA AATACTATGC GTCTACTATT GATTTGACTG GAGGCAAAAA CACCAGAGCG
CTCTTTGGGA TATGCCTGTG CGCTTCTGCT ATTACGCAGC TTACGAAAGG GAAAAGCAAG GAGGAGAAAG AAGGGTCACA
GTTACAATCT CTAGCGGCCA AAGTATTGGA GAAAGATTAC AAACAGAGAG CTCCGGACAA GCTTCCTCAA CTTACAACTG
CCTTAAAGAG TTTAACATTG TCATCATGA

>Vigan.05G140700.01
MVTKTEETQL NRLENQVDNG GGGAWDYLCL VRKLKVRRSQ KVLKHGLSIL NDPKQRSSLG ADEWTLYEQV AVAAMDCQCL
DVAKDCTKVL RKRFPDSKRV GRLEAMLFEA KGSWDLAEKA YASLLEDNPL DQVIHKRRVA MAKAQGNISV AIDWLNKYLE
TFMADHDAWR ELAEIYVSLQ MYKQAAFCYE ELILSQPTVP LYHLAYADVL YTLGGLENLQ TAKKYYASTI DLTGGKNTRA
LFGICLCASA ITQLTKGKSK EEKEGSQLQS LAAKVLEKDY KQRAPDKLPQ LTTALKSLTL SS*