GBrowse Details

Vigan.05G141500.01

Basic Information:
Name: Vigan.05G141500.01
Multiple alignment
Variant Information
Position: Chr05:11546622..11548617 (+ strand)
Length: 1996
Functional Information:
Description: Similar to 40S ribosomal protein S24. [V7BG07, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S24e (IPR001976)
Nucleotide-binding, alpha-beta plait (IPR012677)
Ribosomal protein L23/L15e core domain (IPR012678)
Ribosomal S24e conserved site (IPR018098)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:254.35,344.69,206.61,156.62,341.90,446.10,288.58,159.64
Arabidopsis thaliana homolog: AT5G28060.1
Automatic updates:
Name: NM_001249988 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499852 (LOC100499852), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250287 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305568 (LOC100305568), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251211 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499673 (LOC100499673), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S24-2-like (LOC100802918), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11546622..11546693 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr05:11546694..11546765 (+ strand)
Length: 72
Type: CDS
Position: Chr05:11547193..11547234 (+ strand)
Length: 42
Type: CDS
Position: Chr05:11547401..11547571 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11548079..11548165 (+ strand)
Length: 87
Type: CDS
Position: Chr05:11548260..11548301 (+ strand)
Length: 42
Type: CDS
Position: Chr05:11548302..11548617 (+ strand)
Length: 316
Type: three_prime_UTR


>Vigan.05G141500.01
AGTGTGCGTG TTGTGGAGCT GCTGTAACCG CATCTGTGTG AAGTTCTTCG GTGCCAAACC TCACCCAACA GTATGGCGGA
CAAGGCTGTT ACAATCCGAA CTCGCAAGTT CATGACTAAC AGGCTTCTTT CCAGGAAGCA GTTTGTTGTG GACGTACTTC
ATCCAGGGAG GGCAAATGTT TCCAAGGCTG AACTCAAGGA GAAGCTTGCT AGAATGTACG ACGTCAAAGA CCCAAACACT
GTATTCGTCT TCAAATTCCG AACACATTTT GGTGGTGGCA AATCTACTGG TTTTGGTTTG ATTTATGATT CAGTCGACAA
TGCAAAGAAG TACGAGCCCA AGTACAGGCT TATCAGGAAT GGTCTTGACA CTAAGGTAGA AAAGTCGAGG AAACAAATGA
AGGAGAGGAA AAACAGAGCA AAGAAGATTC GTGGAGTAAA GAAGACGAAG GCTTCTGATG CTGCTAAGGC TGGAAAGAAG
AAATAAGATA TGAGAAATCT TATTTCGATT CTAAGGTTAT ATTGGTTTCG GTGCTTTGTA GTTGTTATTT TATCTTATGC
TAGAATTATA GAATGAGATG TTTTGGCACA AGTGTTGATC CTTATTTTAT TTTATGTTTG CTTATAACTT CATATGTTGA
ATACTAGCAA TTGAACAATT TTGAGAGCTC GTGTTTAACT TTGCTTTCTA ATATTTGGTA AATCGAGGTA GTGAGTTATT
TTGCGTAATC TTATAGAATA CCATTAAAGT TCAACTGAGT AAGTGTTTTT ATTCATCAAT TCTGTATACC TTTTCGATTC
AG

>Vigan.05G141500.01
ATGGCGGACA AGGCTGTTAC AATCCGAACT CGCAAGTTCA TGACTAACAG GCTTCTTTCC AGGAAGCAGT TTGTTGTGGA
CGTACTTCAT CCAGGGAGGG CAAATGTTTC CAAGGCTGAA CTCAAGGAGA AGCTTGCTAG AATGTACGAC GTCAAAGACC
CAAACACTGT ATTCGTCTTC AAATTCCGAA CACATTTTGG TGGTGGCAAA TCTACTGGTT TTGGTTTGAT TTATGATTCA
GTCGACAATG CAAAGAAGTA CGAGCCCAAG TACAGGCTTA TCAGGAATGG TCTTGACACT AAGGTAGAAA AGTCGAGGAA
ACAAATGAAG GAGAGGAAAA ACAGAGCAAA GAAGATTCGT GGAGTAAAGA AGACGAAGGC TTCTGATGCT GCTAAGGCTG
GAAAGAAGAA ATAA

>Vigan.05G141500.01
MADKAVTIRT RKFMTNRLLS RKQFVVDVLH PGRANVSKAE LKEKLARMYD VKDPNTVFVF KFRTHFGGGK STGFGLIYDS
VDNAKKYEPK YRLIRNGLDT KVEKSRKQMK ERKNRAKKIR GVKKTKASDA AKAGKKK*