VIGGS:GBrowse

Vigan.05G142000.01

Basic Information:

Name:	Vigan.05G142000.01 Multiple alignment Variant Information
Position:	Chr05:11581812..11587496 (+ strand)
Length:	5685

Functional Information:

Description:	Similar to Proteasome subunit beta type. [T2DN03, Phaseolus vulgaris]
GO:	Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
	Cellular Component: proteasome core complex (GO:0005839)
	Molecular Function: endopeptidase activity (GO:0004175)
	Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro:	Proteasome, subunit alpha/beta (IPR001353)
	Proteasome beta-type subunit, conserved site (IPR016050)
	Proteasome endopeptidase complex, beta subunit (IPR016295)
	Proteasome B-type subunit (IPR023333)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:120.61,90.63,87.16,70.35,140.06,164.31,108.90,71.81
Arabidopsis thaliana homolog:	AT1G56450.1

Automatic updates:

Name:	NM_001249039 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max thr-endopeptidase (LOC100527174), mRNA.
PubMed ID:	23707235 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001249226 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 20S proteasome beta subunit (LOC100499795), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:11581812..11582010 (+ strand)
Length:	199
Type:	five_prime_UTR

Position:	Chr05:11582011..11582042 (+ strand)
Length:	32
Type:	CDS

Position:	Chr05:11582182..11582258 (+ strand)
Length:	77
Type:	CDS

Position:	Chr05:11582501..11582630 (+ strand)
Length:	130
Type:	CDS

Position:	Chr05:11582870..11583029 (+ strand)
Length:	160
Type:	CDS

Position:	Chr05:11583134..11583319 (+ strand)
Length:	186
Type:	CDS

Position:	Chr05:11586994..11587107 (+ strand)
Length:	114
Type:	CDS

Position:	Chr05:11587108..11587496 (+ strand)
Length:	389
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G142000.01
CTTTTTTTTA CTTTAAAGAA CTTTCTGGTT TGGATTGGGG CTTACGAAAT TAAACTCCGA AAACGCCGTC GTTTGATGTG
AAATATATTT AAGCAAGCTA TATTCTACTT TTTCTTCGTG TTCCTTTTCT TTTCTTTTCT TTTCTTCCCT TCTTCTTTAG
CACTGCTACG ACGATCCAAG GTGATAGATA TTTCTTGCCA TGGAAGGTGT AGCTGAATCC CAGCGAACTC TGTACCCGTA
CGTGACTGGA TCCTCTGTAG TTGCTATCAA ATACAAAGAT GGGATTCTCA TGGCCGCTGA TATGGGAGGT TCATATGGAT
CTACCCTGCG GTACAAGAGT GTTGAGCGTA TCAAGCCTAT TGGAAAACAT TCTCTCCTTG GTGCTAGCGG GGAGATAAGT
GACTTTCAGG AGATTCTGCG CTACCTTGAT GAGCTTATTC TTTATGACAA CATGTGGGAT GATGGGAATT CTCTAGGACC
AAAGGAGGTG CACAATTATT TAACCCGTGT AATGTACAAT CGGCGGAACA AGTTCAATCC TTTGTGGAAT GCACTTGTGC
TTGGTGGAGT TAAAAATGGC CAGAAGTACC TTGGCATGGT TAACATGATT GGGATTAATT TTGAGGATAA CCATGTAGCA
ACTGGGCTTG GAAACCATCT TGCTAGGCCA ATTCTTCGTG ACGAGTGGCA TGAAAACTTG ACCTTTGAAG ATGGTGTCAA
ATTGCTAGAA AAGTGCATGC GTGTGCTTTT ATACCGGGAT AGGTCTGCAG TCAACAAAAT TCAGATATCC AAAATTACAG
ATGAAGGTGC AACTGTTTAC TCACCTTTCT CGTTGAAAAC GTACTGGGAG TTCTCTGCCT TCAAGAATCC AACAGTGGGC
GCTGAAGGTT CGTGGTAGAC CACTCATTGT GAAATGAAAC AGAATTTGAA ATTTCAAGGT GTTAATGGGA TGTAAAATGA
AGTTAAAATA ACTGTTTTTT TTTATGTCTT TTTAGGTTTG AGCTGATCTG TTTCATTAGA ATCTATATTC CAATTTCCTT
TCATTATGAC ATTCATAAGA TACTTTTCCT TTCTCAATTG CTTGCATAGA CATTAGTGCG GCCCACCGGT TTGAATTTTA
AATTAATCAT GCAAAGATTT GAAAACGAGT TTCGATTGTT ATGTTTTCTT TTCCTATAAA AAACTGAATG CATCTGCCAT
TTTGTTTTAG ATGTTGGGTC ACTTGGGATT TCTAGAAGAA ACAATGTAGG GTCATTTTTA TATAATTTTT TGTAGGATAA
CTTTTTT

[show][hide][copy]CDS

>Vigan.05G142000.01
ATGGAAGGTG TAGCTGAATC CCAGCGAACT CTGTACCCGT ACGTGACTGG ATCCTCTGTA GTTGCTATCA AATACAAAGA
TGGGATTCTC ATGGCCGCTG ATATGGGAGG TTCATATGGA TCTACCCTGC GGTACAAGAG TGTTGAGCGT ATCAAGCCTA
TTGGAAAACA TTCTCTCCTT GGTGCTAGCG GGGAGATAAG TGACTTTCAG GAGATTCTGC GCTACCTTGA TGAGCTTATT
CTTTATGACA ACATGTGGGA TGATGGGAAT TCTCTAGGAC CAAAGGAGGT GCACAATTAT TTAACCCGTG TAATGTACAA
TCGGCGGAAC AAGTTCAATC CTTTGTGGAA TGCACTTGTG CTTGGTGGAG TTAAAAATGG CCAGAAGTAC CTTGGCATGG
TTAACATGAT TGGGATTAAT TTTGAGGATA ACCATGTAGC AACTGGGCTT GGAAACCATC TTGCTAGGCC AATTCTTCGT
GACGAGTGGC ATGAAAACTT GACCTTTGAA GATGGTGTCA AATTGCTAGA AAAGTGCATG CGTGTGCTTT TATACCGGGA
TAGGTCTGCA GTCAACAAAA TTCAGATATC CAAAATTACA GATGAAGGTG CAACTGTTTA CTCACCTTTC TCGTTGAAAA
CGTACTGGGA GTTCTCTGCC TTCAAGAATC CAACAGTGGG CGCTGAAGGT TCGTGGTAG

[show][hide][copy]PROTEIN

>Vigan.05G142000.01
MEGVAESQRT LYPYVTGSSV VAIKYKDGIL MAADMGGSYG STLRYKSVER IKPIGKHSLL GASGEISDFQ EILRYLDELI
LYDNMWDDGN SLGPKEVHNY LTRVMYNRRN KFNPLWNALV LGGVKNGQKY LGMVNMIGIN FEDNHVATGL GNHLARPILR
DEWHENLTFE DGVKLLEKCM RVLLYRDRSA VNKIQISKIT DEGATVYSPF SLKTYWEFSA FKNPTVGAEG SW*