GBrowse Details

Vigan.05G144900.01

Basic Information:
Name: Vigan.05G144900.01
Multiple alignment
Variant Information
Position: Chr05:11880652..11885177 (+ strand)
Length: 4526
Functional Information:
Description: Similar to Uncharacterized protein. [I1NIV5, Glycine max]
InterPro: Uncharacterised protein family, transmembrane-40 (IPR018781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.78,9.54,8.89,12.69,7.45,14.71,8.90,9.73
Automatic updates:
Name: NM_001254509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783834 (LOC100783834), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354610 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max G-protein-coupled-receptor CAND2-like protein (LOC100499855), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11880652..11880777 (+ strand)
Length: 126
Type: five_prime_UTR
Position: Chr05:11880778..11881053 (+ strand)
Length: 276
Type: CDS
Position: Chr05:11882221..11882412 (+ strand)
Length: 192
Type: CDS
Position: Chr05:11882679..11882841 (+ strand)
Length: 163
Type: CDS
Position: Chr05:11882910..11883012 (+ strand)
Length: 103
Type: CDS
Position: Chr05:11883093..11883174 (+ strand)
Length: 82
Type: CDS
Position: Chr05:11883259..11883336 (+ strand)
Length: 78
Type: CDS
Position: Chr05:11883337..11885177 (+ strand)
Length: 1841
Type: three_prime_UTR


>Vigan.05G144900.01
GTTGTGGTCA AAGATGTTGT TAGAACCAGT GAGTCACGCA ACAAGTTAAT TGAAGCCGAG CTCCATATAT GCCAAAATCA
AGAAATTAGG GTTTTCTTCT CCCGTGCAAT TCCCCTTTCA GAGACTATGG TTCCACAGAC AGTGATAACG CAAGTCTCCG
ATTCACGTGG CGTGATTTCA AATGGTTCAA CCCACGGGTT CTACGATTGG CTATTCGAAT GTCACGGGTT CTGGCACAAT
GCCATTCTCA TCATTCCCTC CTTCCTCTTC GTCCTGTACC TGATACTTCA AGCCAGACAC AGCTTCCCCA AACTCTCTCT
TTCTCGCTCA TACATCATCC TTTCGTATAA CGCCTCGCTC TGGCTCGCCA CACTTCTCAA TCTTGCTTGG TGCTTTTTCC
AGGCATGGGA GTGCACATCT AGGAGAGAGT TGTCATGGAA CTTGCTATCA TTGTTTACTA CTTCCGGAAT GCTGTTTTTG
GAAGTGAGCT TGGTGGCTTT TTTACTTCAA GGAAATAATG CAGGTGGCTT AGAAGCAATG AAGCGGACTT TTGGTATCTC
AACGCTTGTT GTTGGCTTGG ATATACTGCT GAAGGCTTTA TATGTTCTTG TGTTTGGGAT CCCATTATTT GTCGACAGCA
ATGAAAATAG GAATCATGTG AAATGGAGCT TGTTGATTGT CCACAAGCTG TTGCTCACTG CTGCTTATGG CTTCCTAATG
TTTATGTACC ATTCCGGATG GAGAGAAACG TTGCCTGCGA AAATTGCCTT TTACAAGTAT GTTGCTGTCA TGTTCATTTT
TAATGCGATT GCAACAATTG CTTGTGGCCT CACTGGAAAC GGTGTTGCAT TTGGTTTCTG GTTGTATCGT GTGGCGGTTG
TCTTTTATCA TGCATTTTAC CTTCCTTTTT TGTTCATAAC ATTCCAAACA GACTTTTTTC AGGAAGAAAA TTTTCATTTG
GAAAACGTGT ATTATTCCGA GATGAAAGAT GCGGGTTTCT TCGACACAGA TTGGGAATAA TGTTATCAGC TAAATCAAGG
TTGTATCAGT ATCAGGACTA TGTAAATACA ATAACTATTC TAGCAGATTG CAATATCATG TACAAAGATG TTTATCTGTA
GAACCTCAAA GTGTTCTGTT ATTAAATGAA CATGACTTTT AACGTATACG GAGTTCTCAT CCACTTGGTG TTGTTCAGGT
TAAATTTCTT CCCCTAATTT TTGCAGCAGC CAAATTATCT TAATTACCCA GCAAGAATTG AGAACTAAAT AAAATTAACA
TAAAATGTCA TTGACATAAA TAATCTTATC TCCGGTAAAA CTAACATCAC TGACATAAAC CACTTAATGC AAAAAAGACG
ACTTAATAAA ACTAATTCCC CTGGGCTAAC TTGTCTTCCC AGACTATCTT ATCAAGCAAC AGAGTTCACA ACTAAAACAC
TCGAGACTCA AAATTGCCCC ACACCATAAA TGTTGACTGG TATGGAGACT GAGTTCATGT TTACTCAAAC CTTCTGGTAC
ATGTTTATTC TAAGAACTCT TGTTTTGAAT GATATCTTCG ATAAGATCTG CAGCTTGCTG AACTGTAGTG ATGGTCTGTG
CCCTCTCTTC CTCAATGGCA ATACCGAATT CTTCCTCGAG TGCCATCACG ATCTCAACCT ACAAGGCATG ATATTTAAAC
GAAATCCACA ATTATTCATG GCATATGTAA TATAGGATGC TAGATACAGG TACCATCTGG TAATATACTG TGTACTATGC
CGTTACGTTT TTCTCATTAC CGTGTCAAGG GAATCAGCTC CAAGTTTTTG AAATGTTGAT GCAGCGGTCA CAGTTTCACC
TTCAGCCACG GCCAACTGCT TCTTTACTAT TTCGCAAACC TTGTCCACTG TCTCTGCTTT AGCCTGCTCA AAGGTTATTT
CATAAGCCCG TAAAAAGTAT AAATACATAA ACATATCTAC ATATACACAC AGCAAAGGGA GAAGGCAGGT CCTGGTCATT
TATGGCTTGT TTAGTTAAAT TCCAATAAAA TATGACAAAA TATGACAAAA TATGCCATCA AGCCCTTTGA AAGCCAAAGT
CTGTTACATC CACCATATGT TCTTCTTCAC CCGTTGGTAA ATCTCAAGAA AGCGAAGCAT TAATGGATCA ATTTAAATTG
GTGGAGACGG GATAGAAAAA ATATTCTTTC ATTAATAGCA TCACATTTTT CAACTGGTGT TAAATAGAGA TTAATTAAAG
ACCTGTACAT AAACAGGCAT ACAGTTCCCT GCATGTAAAA CCCTTTACAA AATTAATGAA ACACAAGATT TCAAGAAACA
GATCAGTGTG TATAATTTAC GTTTATAATA TTACGGTTAA TGGCCTTTGC AGCAATATCC ACATAAAAGT TCACAATAGT
AGTTTTCAGT GTTTCTTCAT TTAAAACCAT CTCTTACAAA GCATGAAATT TATGTATGTC AATACACTGT GCGGAACACA
TAGGGTTAAT TGAGGCCAAA GGATAATCAA CCAAAGTAAG GACGTTTGAT CTCACGTTAT AAACTAGCAT ACTATTTCAC
CTTTCACATA ACATTTTTTC TCAATCATAT TTATCAAGCA CCCTGCTTCG AGCAAAGAGA GTTCGCGAAG AAGAAAAATC
CTACAGGCAA TAGGCTTAAG AAGTCTAAAA TACAGGGATT TGATACCCAC GCAAGAAATA GTCAATTACG AAAATATGAA
GAATAACACA CTGCAGTAGC TACTTACAGC ACAGGAAATT TGAAGGCGAA TTTGTTTTGG CTGCAAGTTA AAAGAAACGT
TCTTTCTCCC AAAGCTGGAA ATCAGAGCAG ATCTCCGGCC AGAAAGTGAG GTGAAGGCCT G

>Vigan.05G144900.01
ATGGTTCCAC AGACAGTGAT AACGCAAGTC TCCGATTCAC GTGGCGTGAT TTCAAATGGT TCAACCCACG GGTTCTACGA
TTGGCTATTC GAATGTCACG GGTTCTGGCA CAATGCCATT CTCATCATTC CCTCCTTCCT CTTCGTCCTG TACCTGATAC
TTCAAGCCAG ACACAGCTTC CCCAAACTCT CTCTTTCTCG CTCATACATC ATCCTTTCGT ATAACGCCTC GCTCTGGCTC
GCCACACTTC TCAATCTTGC TTGGTGCTTT TTCCAGGCAT GGGAGTGCAC ATCTAGGAGA GAGTTGTCAT GGAACTTGCT
ATCATTGTTT ACTACTTCCG GAATGCTGTT TTTGGAAGTG AGCTTGGTGG CTTTTTTACT TCAAGGAAAT AATGCAGGTG
GCTTAGAAGC AATGAAGCGG ACTTTTGGTA TCTCAACGCT TGTTGTTGGC TTGGATATAC TGCTGAAGGC TTTATATGTT
CTTGTGTTTG GGATCCCATT ATTTGTCGAC AGCAATGAAA ATAGGAATCA TGTGAAATGG AGCTTGTTGA TTGTCCACAA
GCTGTTGCTC ACTGCTGCTT ATGGCTTCCT AATGTTTATG TACCATTCCG GATGGAGAGA AACGTTGCCT GCGAAAATTG
CCTTTTACAA GTATGTTGCT GTCATGTTCA TTTTTAATGC GATTGCAACA ATTGCTTGTG GCCTCACTGG AAACGGTGTT
GCATTTGGTT TCTGGTTGTA TCGTGTGGCG GTTGTCTTTT ATCATGCATT TTACCTTCCT TTTTTGTTCA TAACATTCCA
AACAGACTTT TTTCAGGAAG AAAATTTTCA TTTGGAAAAC GTGTATTATT CCGAGATGAA AGATGCGGGT TTCTTCGACA
CAGATTGGGA ATAA

>Vigan.05G144900.01
MVPQTVITQV SDSRGVISNG STHGFYDWLF ECHGFWHNAI LIIPSFLFVL YLILQARHSF PKLSLSRSYI ILSYNASLWL
ATLLNLAWCF FQAWECTSRR ELSWNLLSLF TTSGMLFLEV SLVAFLLQGN NAGGLEAMKR TFGISTLVVG LDILLKALYV
LVFGIPLFVD SNENRNHVKW SLLIVHKLLL TAAYGFLMFM YHSGWRETLP AKIAFYKYVA VMFIFNAIAT IACGLTGNGV
AFGFWLYRVA VVFYHAFYLP FLFITFQTDF FQEENFHLEN VYYSEMKDAG FFDTDWE*