GBrowse Details

Vigan.05G145100.01

Basic Information:
Name: Vigan.05G145100.01
Multiple alignment
Variant Information
Position: Chr05:11886319..11888452 (+ strand)
Length: 2134
Functional Information:
Description: Similar to Uncharacterized protein. [I1JRI0, Glycine max]
InterPro: Transport protein particle (TRAPP) component (IPR007194)
NO signalling/Golgi transport ligand-binding domain (IPR024096)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.13,10.68,9.82,7.43,12.62,17.59,11.75,9.25
Arabidopsis thaliana homolog: AT3G05000.1
Structure :
Position: Chr05:11886319..11886535 (+ strand)
Length: 217
Type: five_prime_UTR
Position: Chr05:11886536..11886687 (+ strand)
Length: 152
Type: CDS
Position: Chr05:11887060..11887177 (+ strand)
Length: 118
Type: CDS
Position: Chr05:11887291..11887554 (+ strand)
Length: 264
Type: CDS
Position: Chr05:11887555..11888452 (+ strand)
Length: 898
Type: three_prime_UTR


>Vigan.05G145100.01
ACCAAAGGCC CTACAGGCCC AAAGTATGTA ACAGAGTTAA GCCCATTCAA GTGCAGCAAT TTCAATTCAG ATGTGTTGGT
TTGGATCGGG GTGAGGCAAG GGAGCAAAAG CGACGAGTAG GACTAATCAG ATTCAGAGTG TATAGTGATT CTGATTCCTT
CGTTTTCCAT TGTTAGCGAG TGCGTGTTAG CGAGAGCGAG AGAGAGAGAG AGAGAAAATG GTTCGTGAAG TTTCAGAGAG
TTGCGTTGAT AGCTTATTGA CGGAGATGGT GGCGTGTTAC TGCAATCGAT TCTACGCCAA CAAGCCTGAA CTCGCTGCAC
GCAGGATCGA GGCCATTGGA TATCAGGTCG GTCACCAGCT TTCTGAAAGG TATACCATGG AGCGGCCTCG GTTCACGGAT
CATCTGGAAG CAATCAAGTT CATCTGCAAG GATTTTTGGT CTGAGCTATT TAAGAAGCAG ATAGATAACT TGAAGACGAA
CCATAGGGGT ACATTTGTAT TGCAAGATAA TAAATTTCGC TGGCTTGCAC GCATGTCAGT TGATCCATCC ACTGATAATG
CTGGTTCGGT TGAGGATAAC AATTCACCTA CAGCTGAAAA CAAGGCGGCA CATGCAATGA GCATGCATCT TTATTTCCCA
TGCGGGATCA TTAGAGGAGC TCTTTCCAAC TTGGGAATTC CTTGTGCAGT TTCTGCGGAT ATATCAAACC TTCCTGCATG
TGTGTATTTC TTTTTCTCTT TTTTTCTCTA ACACAGATCA GAGAAGTACT TTTAGGGATA GAGAAGAGTT CATTTTCATA
ATGAATGTTT TTTGGATGCA CAAGTTATTT ATCTTTCTTA GTTTGGTAAA GGTTATCCAT AGTTTTCAAT AGTGCGTAAT
CACGATGCCA TATCGATTCA GTGTTGTGTT CTGGCATCTG GCTTCTATAT TTTTCACGAT GCCTTTTTGT TGCATCGTTT
GATGTGTGCT TAGGGGGAAA TCTCACAATT TTGATCCCTT TCATTCTGGC AAAGGATTTG AAAATTGAAC CTTGTTTCAT
GTTCTGAATA TGGAAATATG ATCACTGCCT ACTGTTTGGA TAAAATCAAT TCCATTCACT GCTATTTGCA TAGTTTCCAC
CCAAGTCAGA CCTTTTCCGA CCCTGTCTTT GTTTTCTGAC CAGTCCCTAC TGTGTTCTCT GTGTAGACTG TTCTTTGCTC
TTTCTTTTTT GTTTTGTTGA CTGGGCTTTT GGATGATTAT AGATCTTTTT ATTATTATTA ATGAATACGT TTTTAATTTT
ATGTAAACTT TTATATCTAA ACATTTGTAT TTGTAGCATA TTGATATAGA TTATTTAACT TATAAATAAA AGTTTAATTT
AGTAGTCATT ATTCTGCCAT CCCATATAGC AATTTTGAGG TTGGAAATTC TACATGGGCT AGTTGGGATT GGTAACTGTG
ATTATCTAGC ATTGTTGCAA AATAAATGTG ACAAGATTTT GATCAGTTTG AAAGAAAAGT TTAAGTGGTT TCCAGTCTAG
TTGATATTTA ATGGCCTATA GTGAAGTTTA GGAGTGTGAG AGCATCCTTA ATTTTTCAAG TATCTTGATC AAATCATGTT
GGGTGAAGTT GTGCAAGTGT GTATGTATAT TTGTTTTTTA TTGCATCCT

>Vigan.05G145100.01
ATGGTTCGTG AAGTTTCAGA GAGTTGCGTT GATAGCTTAT TGACGGAGAT GGTGGCGTGT TACTGCAATC GATTCTACGC
CAACAAGCCT GAACTCGCTG CACGCAGGAT CGAGGCCATT GGATATCAGG TCGGTCACCA GCTTTCTGAA AGGTATACCA
TGGAGCGGCC TCGGTTCACG GATCATCTGG AAGCAATCAA GTTCATCTGC AAGGATTTTT GGTCTGAGCT ATTTAAGAAG
CAGATAGATA ACTTGAAGAC GAACCATAGG GGTACATTTG TATTGCAAGA TAATAAATTT CGCTGGCTTG CACGCATGTC
AGTTGATCCA TCCACTGATA ATGCTGGTTC GGTTGAGGAT AACAATTCAC CTACAGCTGA AAACAAGGCG GCACATGCAA
TGAGCATGCA TCTTTATTTC CCATGCGGGA TCATTAGAGG AGCTCTTTCC AACTTGGGAA TTCCTTGTGC AGTTTCTGCG
GATATATCAA ACCTTCCTGC ATGTGTGTAT TTCTTTTTCT CTTTTTTTCT CTAA

>Vigan.05G145100.01
MVREVSESCV DSLLTEMVAC YCNRFYANKP ELAARRIEAI GYQVGHQLSE RYTMERPRFT DHLEAIKFIC KDFWSELFKK
QIDNLKTNHR GTFVLQDNKF RWLARMSVDP STDNAGSVED NNSPTAENKA AHAMSMHLYF PCGIIRGALS NLGIPCAVSA
DISNLPACVY FFFSFFL*