VIGGS:GBrowse

Vigan.05G150000.01

Basic Information:

Name:	Vigan.05G150000.01 Multiple alignment Variant Information
Position:	Chr05:12314300..12318207 (- strand)
Length:	3908

Functional Information:

Description:	Similar to uncharacterized protein. [C6T9H0, Glycine max]
GO:	Biological Process: metabolic process (GO:0008152)
	Biological Process: isoprenoid biosynthetic process (GO:0008299)
	Cellular Component: cytoplasm (GO:0005737)
	Molecular Function: mevalonate kinase activity (GO:0004496)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: kinase activity (GO:0016301)
	Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773)
InterPro:	GHMP kinase, ATP-binding, conserved site (IPR006203)
	GHMP kinase N-terminal domain (IPR006204)
	Mevalonate kinase (IPR006205)
	Mevalonate/galactokinase (IPR006206)
	GHMP kinase, C-terminal domain (IPR013750)
	Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
	Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.34,2.18,28.85,7.60,30.29,30.34,12.34,14.72
Arabidopsis thaliana homolog:	AT5G27450.1

Automatic updates:

Name:	NM_001289288 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max mevalonate kinase-like (LOC100820343), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:12314300..12314896 (- strand)
Length:	597
Type:	three_prime_UTR

Position:	Chr05:12314897..12315015 (- strand)
Length:	119
Type:	CDS

Position:	Chr05:12316123..12316536 (- strand)
Length:	414
Type:	CDS

Position:	Chr05:12317014..12317267 (- strand)
Length:	254
Type:	CDS

Position:	Chr05:12317360..12317597 (- strand)
Length:	238
Type:	CDS

Position:	Chr05:12317798..12317930 (- strand)
Length:	133
Type:	CDS

Position:	Chr05:12317931..12318207 (- strand)
Length:	277
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G150000.01
ATGATTTGAT ATTAAAAACT ATAGGGGAAA ATTGGTTACA TCCGTGATTA AGGTTGGGCT TGGATGATAG GTGAAAATGT
ACAGAAATGT CTGTTGATAA TTAATTGCGC ACGCATTCCA CATGGATCCG CTTCACTGGA CTCAGACACA TATAGGAAGA
CAAAACGACA CGGATTACTC AGAACCCTTG GGGAAGAAGA AGAAGAAGAA AAAGCAATGA AGTGAGAGAG AAACTTTTGG
TTTGTGAAAT CGCAATTCAT AGCATAACCG AAGAGAAATG GAGGTTAGAG CCAGAGCACC GGGGAAGATT ATATTGACCG
GGGAACATGC TGTGGTTCAT GGATCCACCG CAGTTGCTAC TTCCATTGAT TTATACACCT ACGTTTTTGT CCACTTCTCC
ACTCCTTCCG ACGACGGGGA TTTGTTGACA CTGCAGCTGA AGGACACGGC TTTGGAGTTC TCGTGGCCTA TTAGTAGAAT
AAAAGCGGCG TTTCTAGAAT CCGTGTTATC TTGTACTCCT ACTTCCTGCT CCGTTGAGGT TGCCAAGATC ATTGCCGCAC
TCGTTGAAGA GCTGGACATT CCAGAGGCCA AAATTGGAAT TGCCTCTGGA GTTTCCGCGT TTCTCTGGCT GTACTCTTCT
ATTCAAGGAT TTAAGCCTGC TACTGTGGTT GTCAATTCTG AACTTCCTCT CGGTTCAGGA TTGGGTTCCT CGGCCGCGTT
TTGTGTGGCT CTCGCGTCGG CCTTGTTGGC TTATACTGAT TCTGTTTCTC TGGATTTGAG TCATCAAGGA TGGCTCTCCT
TTACGGAGAA GGATCTTGAG TTGGTAAATA AGTGGGCCTT TGAAGGGGAG AAGATCATTC ATGGAAAGCC ATCTGGAATT
GACAACACAG TAAGCTCGTA TGGTAACATT ATCAGCTTCA AGTCAGGTAA CATAACGCGA ACAAAGTCAA CTTTGACACT
TAAAATGCTC ATCACGAATA CAAAAGTTGG GAGAAACACA AAAGCATTGG TTGCTGGTGT TGGAGAGAGG ATGCTAAGGC
ATCCTGAAAT AATGGCTTTC GTGTTTAGTG CTGTTGATTC TATTAGCAAG GAGCTGACTT CCATTCTCAA GTCACCCACA
CCTGATGAGC TCTCTCTAAC TGAGAAGGAA GAGAAGATAG AAGAACTAAT GGAAATGAAT CAAGGTCTGC TCCAGTCTAT
GGGGGTCAGT CATGCCACTA TAGAAACTGT TCTGCGAACA ACATTGAAAT ATAAGCTAGC TTCCAAATTG ACTGGAGCTG
GTGGTGGGGG CTGTGTTTTG ACGCTGCTTC CAACATTACT ATCAGGCACT ATTGTAGACA AAGTAATTGC TGAACTGGAG
TCATGCGGAT TCCAGTGTTT CATTGCTGGA ATTGGCGGGG GAGGTGTTGA AGTTAACTTT GCGATGTCAT CTTGATTTTC
TATTTTTATT TTTCCAGGTA TTTGATATCG ACAAGTATCA GATCCTCACA TAAACAGCAT AAATAAATAT GCTTCCTTTT
TTACATCTAG CGTGTCAATC TGTAACTTTT TCTTTCTGTT GTTGAATTAA TTTAAACAGT TTCTTATTCA ATCCTGAATG
GAATTGGCGG ATATAAATTC GCGTATTTGA TTAAGAACAT GGTAGTCAGC GGGATCGTGG AGTGACGTAT CGTATCCAAG
GTCCGTCTCT TTCACACGCA CACGCTTTAA GTGATCTTAC TGATGTGGTT TAAAAATTGT ATGAAAACGA TTTAGTGTCA
TAAGGCTGAC TCAGATACTA ATTACCTGGA CTGCTTCGAG AATATTGCCG GAGGAACTGA AAACAGAACA GTACGTACAA
ATTACCCCTT TTTCGTACTA AGTAGCCAAG CCATTTTTGT GTCTGGATAT TGGATCCAGT TATATTGCTA GACTCGTGAG
AGATGAATCG GATCCATTTT CTTGACCCTT AAGAAAAATA GTACATCCTT TACATAAAAG GAGTTGAAAA TATGGAAATG
AATGAGGATA CTTTGTTAAT TACAGAAGTG TT

[show][hide][copy]CDS

>Vigan.05G150000.01
ATGGAGGTTA GAGCCAGAGC ACCGGGGAAG ATTATATTGA CCGGGGAACA TGCTGTGGTT CATGGATCCA CCGCAGTTGC
TACTTCCATT GATTTATACA CCTACGTTTT TGTCCACTTC TCCACTCCTT CCGACGACGG GGATTTGTTG ACACTGCAGC
TGAAGGACAC GGCTTTGGAG TTCTCGTGGC CTATTAGTAG AATAAAAGCG GCGTTTCTAG AATCCGTGTT ATCTTGTACT
CCTACTTCCT GCTCCGTTGA GGTTGCCAAG ATCATTGCCG CACTCGTTGA AGAGCTGGAC ATTCCAGAGG CCAAAATTGG
AATTGCCTCT GGAGTTTCCG CGTTTCTCTG GCTGTACTCT TCTATTCAAG GATTTAAGCC TGCTACTGTG GTTGTCAATT
CTGAACTTCC TCTCGGTTCA GGATTGGGTT CCTCGGCCGC GTTTTGTGTG GCTCTCGCGT CGGCCTTGTT GGCTTATACT
GATTCTGTTT CTCTGGATTT GAGTCATCAA GGATGGCTCT CCTTTACGGA GAAGGATCTT GAGTTGGTAA ATAAGTGGGC
CTTTGAAGGG GAGAAGATCA TTCATGGAAA GCCATCTGGA ATTGACAACA CAGTAAGCTC GTATGGTAAC ATTATCAGCT
TCAAGTCAGG TAACATAACG CGAACAAAGT CAACTTTGAC ACTTAAAATG CTCATCACGA ATACAAAAGT TGGGAGAAAC
ACAAAAGCAT TGGTTGCTGG TGTTGGAGAG AGGATGCTAA GGCATCCTGA AATAATGGCT TTCGTGTTTA GTGCTGTTGA
TTCTATTAGC AAGGAGCTGA CTTCCATTCT CAAGTCACCC ACACCTGATG AGCTCTCTCT AACTGAGAAG GAAGAGAAGA
TAGAAGAACT AATGGAAATG AATCAAGGTC TGCTCCAGTC TATGGGGGTC AGTCATGCCA CTATAGAAAC TGTTCTGCGA
ACAACATTGA AATATAAGCT AGCTTCCAAA TTGACTGGAG CTGGTGGTGG GGGCTGTGTT TTGACGCTGC TTCCAACATT
ACTATCAGGC ACTATTGTAG ACAAAGTAAT TGCTGAACTG GAGTCATGCG GATTCCAGTG TTTCATTGCT GGAATTGGCG
GGGGAGGTGT TGAAGTTAAC TTTGCGATGT CATCTTGA

[show][hide][copy]PROTEIN

>Vigan.05G150000.01
MEVRARAPGK IILTGEHAVV HGSTAVATSI DLYTYVFVHF STPSDDGDLL TLQLKDTALE FSWPISRIKA AFLESVLSCT
PTSCSVEVAK IIAALVEELD IPEAKIGIAS GVSAFLWLYS SIQGFKPATV VVNSELPLGS GLGSSAAFCV ALASALLAYT
DSVSLDLSHQ GWLSFTEKDL ELVNKWAFEG EKIIHGKPSG IDNTVSSYGN IISFKSGNIT RTKSTLTLKM LITNTKVGRN
TKALVAGVGE RMLRHPEIMA FVFSAVDSIS KELTSILKSP TPDELSLTEK EEKIEELMEM NQGLLQSMGV SHATIETVLR
TTLKYKLASK LTGAGGGGCV LTLLPTLLSG TIVDKVIAEL ESCGFQCFIA GIGGGGVEVN FAMSS*