GBrowse Details

Vigan.05G153900.01

Basic Information:
Name: Vigan.05G153900.01
Multiple alignment
Variant Information
Position: Chr05:12665487..12670768 (+ strand)
Length: 5282
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [V7BR12, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.29,19.79,24.18,72.18,18.24,12.69,12.52,19.42
Arabidopsis thaliana homolog: AT1G09130.3
Automatic updates:
Name: NM_001254999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like (LOC100809485), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:12665487..12665611 (+ strand)
Length: 125
Type: five_prime_UTR
Position: Chr05:12665612..12665911 (+ strand)
Length: 300
Type: CDS
Position: Chr05:12666340..12666441 (+ strand)
Length: 102
Type: CDS
Position: Chr05:12666553..12666675 (+ strand)
Length: 123
Type: CDS
Position: Chr05:12666836..12666895 (+ strand)
Length: 60
Type: CDS
Position: Chr05:12667270..12667366 (+ strand)
Length: 97
Type: CDS
Position: Chr05:12667448..12667521 (+ strand)
Length: 74
Type: CDS
Position: Chr05:12669266..12669319 (+ strand)
Length: 54
Type: CDS
Position: Chr05:12669417..12669500 (+ strand)
Length: 84
Type: CDS
Position: Chr05:12669595..12669690 (+ strand)
Length: 96
Type: CDS
Position: Chr05:12669691..12670768 (+ strand)
Length: 1078
Type: three_prime_UTR


>Vigan.05G153900.01
AAAACCTAAA TATATCAAAT CCTCTACCAA AAGAAACAAA AATTGTATAT TACATCTCAC GCTAGCCGGT TCACTGTGTG
TGCTAATCCA TTTGTGGCTG AAACCCAGTT GAAGTATTGC ACAGTATGAT AGGTGGAACC ATGATGGCTG CGTATTTGCG
AGTTCCCATG CTCACTTTCT CACAGTCTTC CACAGCTACG ACAAGGAGAT GCAGAAATCA AAGAACTCGT TGTTCAGTTA
ACGCCGCCAC TAACAGCGCC AAAATTCCAA TGCCTCCTCA CAACCCTAAA GACCCATTTC TCTCCAAGCT CGCCTCCGTC
GCCGCCTCTG CCCCGGAAAC GCTCCTCAAC CCTCCCCGTA ACTCCGACGC CCCTCCTTTT CTCGACATCT TCGATACCCC
CAAACTCATG GCTACTCCCG CTCAAGTTGA AAGGTCTGTT TCATACAATG AACATCGGCC CACAAAACCG CCGCCGGACC
TGCCTTCATT GCTTCTCAAT GGTAGAATTA TTTACATTGG GATGCCTTTG GTTCCGGCTG TCACAGAACT AGTTATTGCG
GAATTGATGT ACTTGCAGTT TATGGATCCT AAAGAGCCAA TCTATATGTA CATAAATTCC ACTGGGACTA CTCGAGATGA
TGGTGAAACG GTAGGCATGG AGACAGAAGG TTTTGCCATT TATGATGCAA TGAGGCAGTT AAAGAACGAG ATACACACAG
TGGGTGTTGG AGCTTGTATA GGTCAAGCCT GTTTGCTACT TTCAGCAGGC ACTCCGGGTA AACGCTTTAT GATGCCACAT
GCTAAAGCTA TGATTCAGCA ACCTCGTATC CCATCCTCTG GGTTGATGCC TGCAAGTGAT GTTCTTATTC GTGCAAAGGA
GGTGATAACT AACAGAGACA ATCTGATTAA ACTACTGGCT AAACACACGG GAAATTCAGA GGAAACAGTT GCTAAAGTGA
TGAGGAGGCC ATATTATATG GATGCAATAA AGGCTAAGGA ATTTGGTGTC ATTGACAGAG TTCTTTGGCG TGGCCAGGAA
AAGATTATGG CTGACGTTGC TCCTCCAGAG GAGTGGGACA AGGGTGCTGG TATTAAAGTT GTAGATGAAT TCTAGTTCCT
CTTTTGTGGA TACATACTTG TCAATGTAAG TGAATCATAT TTTCCTCACT CATTTGGTCA CTGTAAAATG TGGAATCTCT
ATTTGGTTTT TTGTGACAAT GCTTTCCTCG TTTTTTGGGG TGGCCGTGGG GGATACAAAG GCGTTTACTG CTTCAGTTCT
GGCAGTGCGA ACCAAGTGAA GCTCCTAATC TGCTCTGTGA GAATGCAGCA TATATGGTGG TGTTAGGGAA AGTAGAAAAC
GAGCTCTGAA TTGTTTAAAC AAAGATGTAA ATAAGTCCAA ATAAATTTGA ACTAGTTCAA AACATATTGA TTTTGCATAA
AGTTTGTTTC TGAAGCAGTT TAATGAATAA TGTTTGGGTA TCTTTGTTTA AATTGCGCTC ATAAAGCAAA GAAGAAAAAA
GAAAGAGGGA TGGGGAAAAA ATTAAGTTGC CTTTAATTCA AATGGAACTA GTTACTTCAT AGCGTACTTG AAAGTTTCTT
TGGAATACTA CTATAAATGG CCTGGCAATA ATCTGATGTG TATAAGGGTT CTAAACTTTT TTCCTTAAAC ATCAAGCGAC
GACTTGATAT TCTTGTCGGC ATGATGAATG TCTATCTGAT TTAGTTTGCT GTGGCTTACT AATTTTTTAA AAATATCAAG
AGCAAAGTTT CACATATTTT TGTGTTGTGA TCAGAATTTT TATGACGATG GTCTTTTTCA GGTCACAAGT TTCAGTAGGA
TTTGTTTTCA CTGTCTACGA GTCCAGAAAT GTGCCACAGC TATTGACAGA AAACTGACCT GTAGGTTATG AGCCGAAGTG
CCAGAAGGAA GAAAGTTGAT GGACATTTTA CTAAGAATGT TAGGGAAAAA CATAGAAAAA GAAACAGCGA TGTTCATCCA
TGTGGTCATA TACAATGTTT TGGTTCTGGT CATTGTGTAG TCATTGATTG TCGCCCGATT ATTTATATAG GGACTCTGAC
GTTTATCATT ATACTATCAA TGAAGGACAT GCAAATTTGT TATATTTTTG TTTCTATATC GTTCAAGCCA GATGAATCTT
TACAAATTAC CTACCCTTTC TATTATTCAG TTC

>Vigan.05G153900.01
ATGATAGGTG GAACCATGAT GGCTGCGTAT TTGCGAGTTC CCATGCTCAC TTTCTCACAG TCTTCCACAG CTACGACAAG
GAGATGCAGA AATCAAAGAA CTCGTTGTTC AGTTAACGCC GCCACTAACA GCGCCAAAAT TCCAATGCCT CCTCACAACC
CTAAAGACCC ATTTCTCTCC AAGCTCGCCT CCGTCGCCGC CTCTGCCCCG GAAACGCTCC TCAACCCTCC CCGTAACTCC
GACGCCCCTC CTTTTCTCGA CATCTTCGAT ACCCCCAAAC TCATGGCTAC TCCCGCTCAA GTTGAAAGGT CTGTTTCATA
CAATGAACAT CGGCCCACAA AACCGCCGCC GGACCTGCCT TCATTGCTTC TCAATGGTAG AATTATTTAC ATTGGGATGC
CTTTGGTTCC GGCTGTCACA GAACTAGTTA TTGCGGAATT GATGTACTTG CAGTTTATGG ATCCTAAAGA GCCAATCTAT
ATGTACATAA ATTCCACTGG GACTACTCGA GATGATGGTG AAACGGTAGG CATGGAGACA GAAGGTTTTG CCATTTATGA
TGCAATGAGG CAGTTAAAGA ACGAGATACA CACAGTGGGT GTTGGAGCTT GTATAGGTCA AGCCTGTTTG CTACTTTCAG
CAGGCACTCC GGGTAAACGC TTTATGATGC CACATGCTAA AGCTATGATT CAGCAACCTC GTATCCCATC CTCTGGGTTG
ATGCCTGCAA GTGATGTTCT TATTCGTGCA AAGGAGGTGA TAACTAACAG AGACAATCTG ATTAAACTAC TGGCTAAACA
CACGGGAAAT TCAGAGGAAA CAGTTGCTAA AGTGATGAGG AGGCCATATT ATATGGATGC AATAAAGGCT AAGGAATTTG
GTGTCATTGA CAGAGTTCTT TGGCGTGGCC AGGAAAAGAT TATGGCTGAC GTTGCTCCTC CAGAGGAGTG GGACAAGGGT
GCTGGTATTA AAGTTGTAGA TGAATTCTAG 

>Vigan.05G153900.01
MIGGTMMAAY LRVPMLTFSQ SSTATTRRCR NQRTRCSVNA ATNSAKIPMP PHNPKDPFLS KLASVAASAP ETLLNPPRNS
DAPPFLDIFD TPKLMATPAQ VERSVSYNEH RPTKPPPDLP SLLLNGRIIY IGMPLVPAVT ELVIAELMYL QFMDPKEPIY
MYINSTGTTR DDGETVGMET EGFAIYDAMR QLKNEIHTVG VGACIGQACL LLSAGTPGKR FMMPHAKAMI QQPRIPSSGL
MPASDVLIRA KEVITNRDNL IKLLAKHTGN SEETVAKVMR RPYYMDAIKA KEFGVIDRVL WRGQEKIMAD VAPPEEWDKG
AGIKVVDEF*