GBrowse Details

Vigan.05G157000.01

Basic Information:
Name: Vigan.05G157000.01
Multiple alignment
Variant Information
Position: Chr05:12891182..12897755 (- strand)
Length: 6574
Functional Information:
Description: Similar to Glutamate decarboxylase. [A8C8H3, Glycine max]
GO: Biological Process: glutamate metabolic process (GO:0006536)
Biological Process: carboxylic acid metabolic process (GO:0019752)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate decarboxylase activity (GO:0004351)
Molecular Function: carboxy-lyase activity (GO:0016831)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Pyridoxal phosphate-dependent decarboxylase (IPR002129)
Glutamate decarboxylase (IPR010107)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.92,0.86,84.76,238.35,63.28,243.38,321.76,103.85
Arabidopsis thaliana homolog: AT1G65960.2, AT2G02000.1, AT2G02010.1, AT3G17760.1, AT5G17330.1
Automatic updates:
Name: NM_001254052 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GAD protein (LOC547724), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:12891182..12891455 (- strand)
Length: 274
Type: three_prime_UTR
Position: Chr05:12891456..12891947 (- strand)
Length: 492
Type: CDS
Position: Chr05:12892262..12892314 (- strand)
Length: 53
Type: CDS
Position: Chr05:12892422..12892675 (- strand)
Length: 254
Type: CDS
Position: Chr05:12892871..12893085 (- strand)
Length: 215
Type: CDS
Position: Chr05:12893197..12893397 (- strand)
Length: 201
Type: CDS
Position: Chr05:12897125..12897329 (- strand)
Length: 205
Type: CDS
Position: Chr05:12897436..12897521 (- strand)
Length: 86
Type: CDS
Position: Chr05:12897522..12897755 (- strand)
Length: 234
Type: five_prime_UTR


>Vigan.05G157000.01
TCTACCTATA AAATGTATTG ATTGCATTGC AACGCCTACT TTGAATCAGT ACTCAATATA TTACATCTAG ACAATAATTA
TATCTGATAT GTCGTCTATT GATTGGGTTA AGAATACGTA TACCTAATTG TCTTATATAA ATATATCCAA AGTCCACACT
TCCCCATGTC TTCGTTTCTC CACTCTCCAT TCTGAAACAA ACTTTCAATC TCCGACACTC TCACCCTCTC CGACATGGTT
CTCTCCAAAA CCGCTTCCGA ATCCGACGTT TCTGTCCACT CCACCTTCGC TTCTCGCTAT GTCAGAACTT CACTTCCCAG
GTTCAGGATG CCGGAGGAGT CGATTCCAAA GGAAGCAGCG TACCAGATCA TAAACGATGA GTTGATGTTG GATGGGAACC
CAAGGTTGAA CTTGGCTTCG TTTGTGACGA CATGGATGGA ACCTGAGTGT GATAAACTCA TCATGGCTTC CATCAATAAG
AACTATGTTG ACATGGATGA GTACCCTGTC ACCACTGAGC TTCAGAACCG ATGTGTGAAC ATGATAGCTC ATCTTTTTAA
TGCACCACTA GAAGAATCTG AAACTGCTGT TGGTGTTGGC ACGGTCGGTT CATCAGAGGC CATAATGTTG GCTGGATTGG
CCTTCAAAAG GAGGTGGCAA AACAGAAGGA AAGCAGAGGG AAAGCCTTAT GACAAACCCA ACATTGTCAC CGGAGCCAAC
GTTCAGGTTT GCTGGGAGAA ATTCGCAAGG TACTTCGAGG TGGAGTTGAA GGAAGTGAAG CTGCGTGATG GATACTATGT
AATGGACCCT GACCAGGCTG CGGAATTGGT GGATGAGAAC ACTATTTGTG TTGCTGCTAT CCTTGGTTCC ACACTAAACG
GAGAGTTTGA GGATGTCAAA CGCCTCAATG ATCTTCTTGT TGAAAAGAAT AAGCAAACTG GGTGGGAAAC TCCTATTCAC
GTTGATGCAG CCAGTGGTGG ATTCATTGCT CCATTTATTT ACCCAGAGCT TGAGTGGGAT TTCCGATTAC CACTAGTGAA
GAGCATCAAT GTTAGTGGAC ACAAATATGG TTTGGTGTAT GCTGGAATCG GTTGGGTTAT CTGGAGGAGC AAGGAGGACC
TGCCTGAAGA ACTCATCTTC CATATCAACT ATCTCGGAGC TGATCAACCC ACCTTCACAC TTAACTTCTC CAAAGGTTCC
AGCCAAGTCA TTGCTCAATA CTACCAACTA ATTCGCCTTG GTTTTGAGGG CTACAGAAAC GTGATGGAAA ATTGCAGAGA
CAACATGTTG GTGCTGAAAG AGGGACTCGA GAAGACAGGG CGGTTTGCCA TTGTGTCCAA AGACAATGGT GTGCCTTTGG
TTGCTTTCAC CCTGAAAGAC CACACTCACT TTGACGAGTT TCAAATCTCT GACCTGCTGA GACGTTTTGG ATGGATTGTG
CCAGCATACA CCATGCCCCC AGATGCTCAA CATGTTACAG TGCTTCGTGT TGTCATCAGG GAGGACTTTT CAAGAACTCT
TGCAGAGCGT CTGGTGGCAG ATGTGGAAAA GGTGGTGCAT GAGCTTGATA GCCTTCCAGC AAGGGTGATC AGTAGCACCA
CCGTGGCAGT CAACACAGAA GAAAATGGCA AAGTGGTTAA GAAGAGTGCT CTGGAGACAC AGAGGGAAAT CACTGCGGTT
TGGAAGAAGT TTGTGTTGGA GAGGAAGAAG CTCAATGACA AGATGAATGG TGTTTGCTAG AGTTAGCTTG AAGAGTGTGT
TGTGCCTATC CCTGCCTAGT AGTTTTTTTA ATGTATGATT TGGGCAGTGT GTACGTTTTA TTGAGTCAAG CCTATCAGAT
TCAGTTGTTA ATTTGATCCG AGGCAAAATT CTAGACGCGA TTATCTATGT AAGTCTGGTT CACTTTGTTT TATGAACATG
GATTATATTT ATCTTCACTT GTCCTAATCC TATTGTTGTA AGTTCAAATT ATGCGTATGT CTCCCAAAAA TTTATGAGAG
AATGAAACCT GTTT

>Vigan.05G157000.01
ATGGTTCTCT CCAAAACCGC TTCCGAATCC GACGTTTCTG TCCACTCCAC CTTCGCTTCT CGCTATGTCA GAACTTCACT
TCCCAGGTTC AGGATGCCGG AGGAGTCGAT TCCAAAGGAA GCAGCGTACC AGATCATAAA CGATGAGTTG ATGTTGGATG
GGAACCCAAG GTTGAACTTG GCTTCGTTTG TGACGACATG GATGGAACCT GAGTGTGATA AACTCATCAT GGCTTCCATC
AATAAGAACT ATGTTGACAT GGATGAGTAC CCTGTCACCA CTGAGCTTCA GAACCGATGT GTGAACATGA TAGCTCATCT
TTTTAATGCA CCACTAGAAG AATCTGAAAC TGCTGTTGGT GTTGGCACGG TCGGTTCATC AGAGGCCATA ATGTTGGCTG
GATTGGCCTT CAAAAGGAGG TGGCAAAACA GAAGGAAAGC AGAGGGAAAG CCTTATGACA AACCCAACAT TGTCACCGGA
GCCAACGTTC AGGTTTGCTG GGAGAAATTC GCAAGGTACT TCGAGGTGGA GTTGAAGGAA GTGAAGCTGC GTGATGGATA
CTATGTAATG GACCCTGACC AGGCTGCGGA ATTGGTGGAT GAGAACACTA TTTGTGTTGC TGCTATCCTT GGTTCCACAC
TAAACGGAGA GTTTGAGGAT GTCAAACGCC TCAATGATCT TCTTGTTGAA AAGAATAAGC AAACTGGGTG GGAAACTCCT
ATTCACGTTG ATGCAGCCAG TGGTGGATTC ATTGCTCCAT TTATTTACCC AGAGCTTGAG TGGGATTTCC GATTACCACT
AGTGAAGAGC ATCAATGTTA GTGGACACAA ATATGGTTTG GTGTATGCTG GAATCGGTTG GGTTATCTGG AGGAGCAAGG
AGGACCTGCC TGAAGAACTC ATCTTCCATA TCAACTATCT CGGAGCTGAT CAACCCACCT TCACACTTAA CTTCTCCAAA
GGTTCCAGCC AAGTCATTGC TCAATACTAC CAACTAATTC GCCTTGGTTT TGAGGGCTAC AGAAACGTGA TGGAAAATTG
CAGAGACAAC ATGTTGGTGC TGAAAGAGGG ACTCGAGAAG ACAGGGCGGT TTGCCATTGT GTCCAAAGAC AATGGTGTGC
CTTTGGTTGC TTTCACCCTG AAAGACCACA CTCACTTTGA CGAGTTTCAA ATCTCTGACC TGCTGAGACG TTTTGGATGG
ATTGTGCCAG CATACACCAT GCCCCCAGAT GCTCAACATG TTACAGTGCT TCGTGTTGTC ATCAGGGAGG ACTTTTCAAG
AACTCTTGCA GAGCGTCTGG TGGCAGATGT GGAAAAGGTG GTGCATGAGC TTGATAGCCT TCCAGCAAGG GTGATCAGTA
GCACCACCGT GGCAGTCAAC ACAGAAGAAA ATGGCAAAGT GGTTAAGAAG AGTGCTCTGG AGACACAGAG GGAAATCACT
GCGGTTTGGA AGAAGTTTGT GTTGGAGAGG AAGAAGCTCA ATGACAAGAT GAATGGTGTT TGCTAG

>Vigan.05G157000.01
MVLSKTASES DVSVHSTFAS RYVRTSLPRF RMPEESIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI
NKNYVDMDEY PVTTELQNRC VNMIAHLFNA PLEESETAVG VGTVGSSEAI MLAGLAFKRR WQNRRKAEGK PYDKPNIVTG
ANVQVCWEKF ARYFEVELKE VKLRDGYYVM DPDQAAELVD ENTICVAAIL GSTLNGEFED VKRLNDLLVE KNKQTGWETP
IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RSKEDLPEEL IFHINYLGAD QPTFTLNFSK
GSSQVIAQYY QLIRLGFEGY RNVMENCRDN MLVLKEGLEK TGRFAIVSKD NGVPLVAFTL KDHTHFDEFQ ISDLLRRFGW
IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVADVEKV VHELDSLPAR VISSTTVAVN TEENGKVVKK SALETQREIT
AVWKKFVLER KKLNDKMNGV C*