GBrowse Details

Vigan.05G159200.01

Basic Information:
Name: Vigan.05G159200.01
Multiple alignment
Variant Information
Position: Chr05:13119694..13121902 (+ strand)
Length: 2209
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZJ4, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.28,24.40,78.03,19.66,0.00,43.76,0.03,9.13
Arabidopsis thaliana homolog: AT1G17200.1
Automatic updates:
Name: NM_001252838 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CASP-like protein 10-like (LOC100790042), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:13119694..13119825 (+ strand)
Length: 132
Type: five_prime_UTR
Position: Chr05:13119826..13120040 (+ strand)
Length: 215
Type: CDS
Position: Chr05:13120833..13120950 (+ strand)
Length: 118
Type: CDS
Position: Chr05:13121473..13121748 (+ strand)
Length: 276
Type: CDS
Position: Chr05:13121749..13121902 (+ strand)
Length: 154
Type: three_prime_UTR


>Vigan.05G159200.01
CTCCACTCTT TCCTTTAATG CCCTACATGC CTACCCTATC ACCACTACCA ACTAGTATAA CATACTCTTC AAAACCTACC
AACACACATA AAAACAAAGC TTTTGTTCAT AAGAAATAGT ATACAAACAA GGATGGAGAA AACAAATGTT GTGGAAGGTT
CAAGATCTCC CATGCAGATG AAGATGGGAG ATGAGTTGGA AGGCAACACC AACACCCTTC GCACTGCCGA AACCTTCCTG
CGGTTGCTTC CTGTTGCTCT TTGTGTTTCT GCACTTGTTC TCATGCTTAA GAACTCTCAG CAAAATCAAT ATGGTTCTGT
TGATTACACT GACCTTGGAG CTTTCAAGTA TCTGGTGCAT GCGAATGGCA TTTGTGCAGG TTACTCTCTA TTTTCAGCTG
TTATTGCTGC TATGCCACGA CCTTCTACTA TGCCTCGTGC TTGGACTTTC TTTTTGCTTG ATCAGGTGCT AACATACATA
GTTCTAGCTG CTGGAGCAGT GTCAACTGAG GTTTTGTACC TAGCTGAGAA TGGCAACACT GCCACAACAT GGAGCTCAGC
TTGTGGATCA TTTGGTCGAT TCTGTAACAA GGTGACAGCA TCAATTACGA TCACATTTGT GGCAGTGCTT TGCTATGTGT
TGCTTTCTCT CATTTCCTCT TACAAGCTGT TCACCAAGTA TGATGCACCA GCAGCATGCA GACCAACTTC ACCCATTGAG
GTTGCTGCTT TCCCTGGCTA AATCAACCCT TATGTATAAC AATGTGCTTC ATGCATGTGT CTGCTTAATT ACTTCCAATC
AATAATGTAA TGACATGCTC TTGTGTTAAT TAGGACCTTA ATTGTGAGTT TATAATTAAT ATATAACCTT TGACCTCCTT
AACACTATGC ATCTG

>Vigan.05G159200.01
ATGGAGAAAA CAAATGTTGT GGAAGGTTCA AGATCTCCCA TGCAGATGAA GATGGGAGAT GAGTTGGAAG GCAACACCAA
CACCCTTCGC ACTGCCGAAA CCTTCCTGCG GTTGCTTCCT GTTGCTCTTT GTGTTTCTGC ACTTGTTCTC ATGCTTAAGA
ACTCTCAGCA AAATCAATAT GGTTCTGTTG ATTACACTGA CCTTGGAGCT TTCAAGTATC TGGTGCATGC GAATGGCATT
TGTGCAGGTT ACTCTCTATT TTCAGCTGTT ATTGCTGCTA TGCCACGACC TTCTACTATG CCTCGTGCTT GGACTTTCTT
TTTGCTTGAT CAGGTGCTAA CATACATAGT TCTAGCTGCT GGAGCAGTGT CAACTGAGGT TTTGTACCTA GCTGAGAATG
GCAACACTGC CACAACATGG AGCTCAGCTT GTGGATCATT TGGTCGATTC TGTAACAAGG TGACAGCATC AATTACGATC
ACATTTGTGG CAGTGCTTTG CTATGTGTTG CTTTCTCTCA TTTCCTCTTA CAAGCTGTTC ACCAAGTATG ATGCACCAGC
AGCATGCAGA CCAACTTCAC CCATTGAGGT TGCTGCTTTC CCTGGCTAA

>Vigan.05G159200.01
MEKTNVVEGS RSPMQMKMGD ELEGNTNTLR TAETFLRLLP VALCVSALVL MLKNSQQNQY GSVDYTDLGA FKYLVHANGI
CAGYSLFSAV IAAMPRPSTM PRAWTFFLLD QVLTYIVLAA GAVSTEVLYL AENGNTATTW SSACGSFGRF CNKVTASITI
TFVAVLCYVL LSLISSYKLF TKYDAPAACR PTSPIEVAAF PG*