GBrowse Details

Vigan.05G165500.01

Basic Information:
Name: Vigan.05G165500.01
Multiple alignment
Variant Information
Position: Chr05:13716229..13723418 (+ strand)
Length: 7190
Functional Information:
Description: Similar to metal tolerance protein 4-like. [XP_004500396.1, Cicer arietinum]
GO: Biological Process: cation transport (GO:0006812)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: cation transmembrane transporter activity (GO:0008324)
InterPro: Cation efflux protein (IPR002524)
Cation efflux protein transmembrane domain (IPR027469)
Cation efflux protein cytoplasmic domain (IPR027470)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.42,12.73,1.86,4.64,2.36,3.09,10.84,1.59
Arabidopsis thaliana homolog: AT3G58060.1
Automatic updates:
Name: NM_001255074 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cation efflux family protein (LOC100785952), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:13716229..13716412 (+ strand)
Length: 184
Type: five_prime_UTR
Position: Chr05:13716413..13716644 (+ strand)
Length: 232
Type: CDS
Position: Chr05:13717212..13717381 (+ strand)
Length: 170
Type: CDS
Position: Chr05:13717787..13717985 (+ strand)
Length: 199
Type: CDS
Position: Chr05:13718749..13718927 (+ strand)
Length: 179
Type: CDS
Position: Chr05:13719008..13719158 (+ strand)
Length: 151
Type: CDS
Position: Chr05:13719447..13719577 (+ strand)
Length: 131
Type: CDS
Position: Chr05:13720517..13720696 (+ strand)
Length: 180
Type: CDS
Position: Chr05:13720697..13723418 (+ strand)
Length: 2722
Type: three_prime_UTR


>Vigan.05G165500.01
TTGCACAATA TATTCAAATT GAGTTTATTT TTATTTTAAC CCATAGTTTT AATTATAGCT GGCTATATAT GATCTGTGTC
TAAGGCTATG GATATGATAT TTTTGTTAGT TGCGGTTCAT TTTTAGAATC TCTGTGAGCC TTGCATGTGT CACGACTTTT
GTCCTAGTAG GTTCATCAAT CGTCATGGAA ACAAGCACAG GTTTGGATCC GACGCTTCCG CTTCTCCAAA ACGACAATTA
TGAGAACAAC TCCGCCAAAA ACGGTGGCCG GACTGACCGA CTCACTCGTC GGAACTCGGT CAACTCTATC AGAACCTTCT
TCTTCTCCAA GCTTCCCGAT AAAGTCCGTT CTGGCCTAGA CTCCGAGTCT CCCTACGACG GCATTAACCT CTCCTCCACC
ACCGCCTTAA GCAAAGGGGA AATAGAATAC TATGAAAGAC AATTAGCTAC TCTGAAATCG TTTGAGGAAG TGGACTCTGT
GGTGTCATCT GATTGCATTG ATGAGGAAGA CAGTGCTGGA CTAGCTCAAC AAGAAAGAGC GATGAGGATT TCTAATTATG
CAAATGTAGC ATTGTTGATA TTAAAGAGTT ATGCGACCAT AAGGAGTGGG TCAATAGCTA TTGCGGCATC AACTTTGGAT
TCTCTGCTTG ATCTCATGGC TGGTGGCATA CTTTGGTTCA CTCACCTCGC AATGAAGAAC ATAAATATCT ATAAATACCC
AATAGGAAAG TTAAGAGTTC AGCCAGTTGG CATTATTATC TTTGCAGCAA TCATGGCTAC ACTTGGCTTT CAGGTATTAA
TCACAGCTGT ACAAAAACTA ATACAAAACA GTCCTAGTGA AATTATGTCC CCGGAACAGA TAATATGGTT GTACTCTATT
ATGCTATTTG CAACAGCAGT GAAGCTTGTG CTCTGGCTTT ACTGTAGAAA CTCGGCAAAC AAGATTGTCC GTGCCTATGC
AGATGATCAT CAATTTGATG TTGTAACAAA CGTGGTTGGA TTAGTTGCAG CTGTACTTGG TGATAAATAT TACTGGTGGA
TCGACCCGAT TGGAGCTATT ATGCTTGCAA TTTACACTAT TACAAATTGG TCACGCACTG TCATGGAAAA TGCAGTTTCA
CTGGTGGGAC AATCTGCACC TCCTGAAGTT TTGCAGAAGC TCACATATCT CGTTATAAGG CACCCTAGAG TCAAGCGCAT
TGATACTGTT CGCGCATATA CATTTGGGGT TCTGTATTTT GTGGAGGTTG ACATTGAACT GCCAGAAGAT TTACCCTTAA
AAGAAGCACA CGCCATTGGG GAGAGCCTAC AGATAAAGCT CGAGAAACTC CCAGAAGTTG AGCGGGCGTT TGTTCATTTA
GACTTCGAAT GTGATCATAA ACCAGAGCAC TCAGTTCTCG TCAAACTGCC CAACAATCAG TCTTAAGCAC ATTTTTCAGG
TATATGTATA AAACTGCCCA ACCTCTGTTG TAGAGTCTAT GGCAAATAAC TTCTTCACGA AGAACGAAAC TTTAAGCAGT
AGAGAAGGAT CCAGCTGTTT GTATGTGTGA AACGGCAACC ATTATGTTTG CAAAAAATTT CCTTTTAATT AAATTGTTAT
TTAGTTCAGA AGACTTGTCT GGAAAAGACG AAATACGCTA AAAAAACAGA GAAGGGGTCC TTGTAGACCT CGACATCTTT
ACCACAGCTC AGAAACAATA TACACAACAG AAACCATATT TATTTATTTC TATTCTGTTT AAAGTGTGAC AGAATAATGA
GATTTCAATA CAACAAATGT GCGTCTTTCA AGCTCCCAGG GCATTTGGAA GACAGATTGA TACATAATTT ATAGTTACAG
TTCAGACTAT AATCAACAGG TAACAAATGA ATTCACCAGG TGAAACGAAA AGCCATACAT TCAATTAATT TCCTACTGGT
AAATGACCTA AGCAGTAGCT GGTAAGAAAG CTCTTCCGGG CGCACGATTT GCCAAAGGTC CGTGACACCC AAGAACCTGA
GAAGGACAAA ATCAAATAGT CAATCTACTA ATCCTAAAGA AACTCAAATC AAAATTTCCA AGTTCCCTTC TAAGTAAGGG
ATTTATTCAA GAATAGTGAA TCACATTGCA GAAATACTTT TCAAAATAAC ATTTTATGAT CTAAGGACAA ACCTTGGCGT
TGACCCCATC CGGCACAATT CTGTTTTCAG ACTTCAACTT CAAATACTCA CTTCGACTTA GCTTTGTAAA TCCCCTGAAA
ATTTAAAGAA AACTACTAAA TAAACGGGCA TTACCACCAA ATTAACCTTA TTTAAGCAAA AAAAAAAAAG AGGTTAAATT
CAAGCTGGTT AACAATTCTT GATGTTTTTA ATCTTTTAAA ATATATGAAA TTTGATTTTA ATATTTTTAA AGAAATTATT
AGTTTTTTTT CTCAAAAGTG ATTCCCATCG TCATTAAATA ATGTCGAATA TATTTAGACA TATAATCTTA ATTATCATTC
TAATATAGCA TATATACATC ATGTCATCAA TAAACAATAA CAGAAATTGT TTAAAAATAA ATAAATTTAC AGAGCTAAAA
TGGTAAGAAT GTAAATTCGT ACGGGTCATC CACATAAAAG AAAATTATCC TCCAATGAAA TAAAAATCAT GTATGCCTTT
TTAATTTTAA TACAATGTAG AAGCACTATT ACTCGATTTT GCAAATACCA GTTTTAAGAA TTAATCTGCC ACCAAGTTTT
TCGCGCAACG GTTAAAATTT TCCAAATTAT TGTAACATCC ACTCTATATT CTTAATATTT CAATTTTCCC AACGATTTAG
AAGGGTTGTT TATCGATTTC AATCAATGCA AAAACTGATA TATGAATATA TGAAACCAAA ATAACTAACC ACTTTCTGCT
GACAATAATC TTCTGACGGC CAGGGAACTT GAACTTGGCG CGGCGAAGAG CCTCCTGAGC GTTCTGACCA TTCCCATCCT
TACATCGAAC GGAGAGCAGC ACCTGTCCAA TACTCACTCT CGCGCATGTC CCCTGCGGCT TTCCGAACGC CCCCCTCATC
CCGGTCTGGA GCCTGTCCGC CCCGGCGCAC GATAGCATCT TGTTGATACG GAGCACGTGG AAGGGGTGCA CCCTAACGCG
CAGGTGGAAC GCGTCCTTCC CCGCGAACTT CGCCATGTAC TTGTTGCAGG CTATGCGCGC CGCCTCCAAG GCCTCGCTGG
ACACGTTCTC CTTCTCCCAG GAGACGAGGT GGACGCAGAA GGGAAACTCG TCCACGCCTT TCTTCTTCAT CCCCACGTCG
TATATTCGGA TCTTCGGATC CGGAACGCCG CGGCAGAACC GCGACTTCGG ATACGGCTTG TTCTTTATCT GACGGTAACA
ACGCGCCGGT CCTGAACCAC ATCACACGCT CACCGTTACA GAAATTGGTA ACACAATTCC TCATCCTCTT TCAGTCATTA
ACTATTCGAT CATATCATAT CGTTCTTTAG GACAATCATT TCCATTAACC AACTGGTTAC AAGTTTTAAT AGCCAGCGTA
AAATTATTAA ATTCTACATT TAACATTTAA ATTTAAAATC AATTCATACA TAAACCCTAC AGTTAAACTA AAGTTGATGG
AAAACTAGTT TAACTAATTG CTTCATGTTA TACTTCAAAA AGTTCTAGGC CTGTTATTAG TTTCTAATTA TATAAATGTC
ACAGAATAGG GTTATATCTA AAGACGAAAT GTAAGAAAAT TTACTGAATC AAAACATAAA AGATGAATAT TCTATGCTAC
CAGATAAAGG AATTAAATCA TCAAAAAAAT TATCTAAATA TGACCTAACT AACTACTTTA CTAGATTTCT ACATTATTCA
ATGATAATAT ATTTGGCGTA ATACATTGAA GAAGCAGATT TAACATTCAG AAGGAACCGA AAGAAAAAAA AAAAAGAGAG
ATTCTTGTGG CTTACTTCTT CCCATTATGT TTGAGTTGCG TTGATGAAAT AGTCCAAGAG TTTAAGAAGG AGGGGGAGAA
GATGGTGGTC CTTTTATACC CTTCGGAGGT GCACGCGGTT TGTGTTGGTG TGCGTATGGG CGTGCGTCAT GTTTTCTGGC
GTGGGCCCGT TTTGGGTGTC GGCCCAGAAT GTTCGAGAAG AGGTTAGCTT TTTGGACCCG TTATTGAG

>Vigan.05G165500.01
ATGGAAACAA GCACAGGTTT GGATCCGACG CTTCCGCTTC TCCAAAACGA CAATTATGAG AACAACTCCG CCAAAAACGG
TGGCCGGACT GACCGACTCA CTCGTCGGAA CTCGGTCAAC TCTATCAGAA CCTTCTTCTT CTCCAAGCTT CCCGATAAAG
TCCGTTCTGG CCTAGACTCC GAGTCTCCCT ACGACGGCAT TAACCTCTCC TCCACCACCG CCTTAAGCAA AGGGGAAATA
GAATACTATG AAAGACAATT AGCTACTCTG AAATCGTTTG AGGAAGTGGA CTCTGTGGTG TCATCTGATT GCATTGATGA
GGAAGACAGT GCTGGACTAG CTCAACAAGA AAGAGCGATG AGGATTTCTA ATTATGCAAA TGTAGCATTG TTGATATTAA
AGAGTTATGC GACCATAAGG AGTGGGTCAA TAGCTATTGC GGCATCAACT TTGGATTCTC TGCTTGATCT CATGGCTGGT
GGCATACTTT GGTTCACTCA CCTCGCAATG AAGAACATAA ATATCTATAA ATACCCAATA GGAAAGTTAA GAGTTCAGCC
AGTTGGCATT ATTATCTTTG CAGCAATCAT GGCTACACTT GGCTTTCAGG TATTAATCAC AGCTGTACAA AAACTAATAC
AAAACAGTCC TAGTGAAATT ATGTCCCCGG AACAGATAAT ATGGTTGTAC TCTATTATGC TATTTGCAAC AGCAGTGAAG
CTTGTGCTCT GGCTTTACTG TAGAAACTCG GCAAACAAGA TTGTCCGTGC CTATGCAGAT GATCATCAAT TTGATGTTGT
AACAAACGTG GTTGGATTAG TTGCAGCTGT ACTTGGTGAT AAATATTACT GGTGGATCGA CCCGATTGGA GCTATTATGC
TTGCAATTTA CACTATTACA AATTGGTCAC GCACTGTCAT GGAAAATGCA GTTTCACTGG TGGGACAATC TGCACCTCCT
GAAGTTTTGC AGAAGCTCAC ATATCTCGTT ATAAGGCACC CTAGAGTCAA GCGCATTGAT ACTGTTCGCG CATATACATT
TGGGGTTCTG TATTTTGTGG AGGTTGACAT TGAACTGCCA GAAGATTTAC CCTTAAAAGA AGCACACGCC ATTGGGGAGA
GCCTACAGAT AAAGCTCGAG AAACTCCCAG AAGTTGAGCG GGCGTTTGTT CATTTAGACT TCGAATGTGA TCATAAACCA
GAGCACTCAG TTCTCGTCAA ACTGCCCAAC AATCAGTCTT AA

>Vigan.05G165500.01
METSTGLDPT LPLLQNDNYE NNSAKNGGRT DRLTRRNSVN SIRTFFFSKL PDKVRSGLDS ESPYDGINLS STTALSKGEI
EYYERQLATL KSFEEVDSVV SSDCIDEEDS AGLAQQERAM RISNYANVAL LILKSYATIR SGSIAIAAST LDSLLDLMAG
GILWFTHLAM KNINIYKYPI GKLRVQPVGI IIFAAIMATL GFQVLITAVQ KLIQNSPSEI MSPEQIIWLY SIMLFATAVK
LVLWLYCRNS ANKIVRAYAD DHQFDVVTNV VGLVAAVLGD KYYWWIDPIG AIMLAIYTIT NWSRTVMENA VSLVGQSAPP
EVLQKLTYLV IRHPRVKRID TVRAYTFGVL YFVEVDIELP EDLPLKEAHA IGESLQIKLE KLPEVERAFV HLDFECDHKP
EHSVLVKLPN NQS*