GBrowse Details

Vigan.05G166900.01

Basic Information:
Name: Vigan.05G166900.01
Multiple alignment
Variant Information
Position: Chr05:13898174..13899403 (- strand)
Length: 1230
Functional Information:
Description: Similar to glutathione S-transferase parA-like. [XP_004500375.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Glutathione S-transferase, N-terminal (IPR004045)
Glutathione S-transferase, C-terminal (IPR004046)
Glutathione S-transferase, C-terminal-like (IPR010987)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.27,0.07,7.51,0.22,0.16,0.00,1.75,0.17
Automatic updates:
Name: KM818456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tau class glutathione S-transferase (GSTU43) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001249658 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tau class glutathione S-transferase (GSTU43), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:13898174..13898332 (- strand)
Length: 159
Type: three_prime_UTR
Position: Chr05:13898333..13898677 (- strand)
Length: 345
Type: CDS
Position: Chr05:13899027..13899344 (- strand)
Length: 318
Type: CDS
Position: Chr05:13899345..13899403 (- strand)
Length: 59
Type: five_prime_UTR


>Vigan.05G166900.01
CAATCTCAGT CTCAGATTAA AACTAATCCA ACTAAACCAC ACACATTCTC AAGGCAAAAA TGGCAGATTC CAATGTGGTT
CTACTGGATT TCTGGCCAAG CTCTTACGGA ATGAGAGTGA AAATCGCTTT GGCAGAGAAG GGTATCTCGT ATGAGTGCAA
GCAAGAAGAT TTAGAAGCTA AAAGCTCTCT GCTTCTAGAG ATGAACCCAG TTCACAAAAT GATACCAGTT TTGATTCATA
ATGCAAAACC CATCTGTGAG TCACTCAATA TTGTTCAGTA CATTGACGAG GCATGGAAAC ACAAATCTTC TCTGCTTCCC
TCTGACCCTT ACAAGCGATC CCAAGCCAGG TTTTGGGGCG ATTACATTGA CAAAAATGTA TACAATGCTG TGAAGAGGGT
ATGGTCGGGG AAGGGTAAAG AGCAAGAAGA GTGGAAGAAA GAACTGATAG AATGTTTGAA GAGGCTGGAA GATGAACTTG
GAGACAAGGC ATATTTTGGT GGTGAAGAGT TTGGGTATGT GGATGTGGCT CTTGTTCCTT TCACTAGCTG GTTTTACACG
GTTGAGACGT TTGGGAAACT AAGCATTGAA GATGAGTGTC CAACACTTGT GGCTTGGGCC AAAAGGTGCA TGCAGAAAGA
GACTGTGGCC TCATCACTCC CTCACCCTGA ACAGATCTAT GCTTTTGCCC TGCAATATAA ACACAGACAT GGACTTCAGT
AGATACATGT CTGTTACTAC AATTACGTTG TAAGAAGTAT ATGTACTACG TGTGTGTCTG TGTTTTTTTC TTGGAAGTTA
GAATCTCTTG TTTATAAATA AATTACATGT CTTCTACACC TAATAAGCAT TCATATTGCT ATCATTAAAG AAAATCAGTC
A

>Vigan.05G166900.01
ATGGCAGATT CCAATGTGGT TCTACTGGAT TTCTGGCCAA GCTCTTACGG AATGAGAGTG AAAATCGCTT TGGCAGAGAA
GGGTATCTCG TATGAGTGCA AGCAAGAAGA TTTAGAAGCT AAAAGCTCTC TGCTTCTAGA GATGAACCCA GTTCACAAAA
TGATACCAGT TTTGATTCAT AATGCAAAAC CCATCTGTGA GTCACTCAAT ATTGTTCAGT ACATTGACGA GGCATGGAAA
CACAAATCTT CTCTGCTTCC CTCTGACCCT TACAAGCGAT CCCAAGCCAG GTTTTGGGGC GATTACATTG ACAAAAATGT
ATACAATGCT GTGAAGAGGG TATGGTCGGG GAAGGGTAAA GAGCAAGAAG AGTGGAAGAA AGAACTGATA GAATGTTTGA
AGAGGCTGGA AGATGAACTT GGAGACAAGG CATATTTTGG TGGTGAAGAG TTTGGGTATG TGGATGTGGC TCTTGTTCCT
TTCACTAGCT GGTTTTACAC GGTTGAGACG TTTGGGAAAC TAAGCATTGA AGATGAGTGT CCAACACTTG TGGCTTGGGC
CAAAAGGTGC ATGCAGAAAG AGACTGTGGC CTCATCACTC CCTCACCCTG AACAGATCTA TGCTTTTGCC CTGCAATATA
AACACAGACA TGGACTTCAG TAG

>Vigan.05G166900.01
MADSNVVLLD FWPSSYGMRV KIALAEKGIS YECKQEDLEA KSSLLLEMNP VHKMIPVLIH NAKPICESLN IVQYIDEAWK
HKSSLLPSDP YKRSQARFWG DYIDKNVYNA VKRVWSGKGK EQEEWKKELI ECLKRLEDEL GDKAYFGGEE FGYVDVALVP
FTSWFYTVET FGKLSIEDEC PTLVAWAKRC MQKETVASSL PHPEQIYAFA LQYKHRHGLQ *