GBrowse Details

Vigan.05G170000.01

Basic Information:
Name: Vigan.05G170000.01
Multiple alignment
Variant Information
Position: Chr05:14278971..14281511 (+ strand)
Length: 2541
Functional Information:
Description: Similar to expansin-A8. [XP_003538280.1, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.55,1.64,163.88,100.35,6.42,3.32,10.62,116.62
Automatic updates:
Name: BT090385 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-4I6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-A8-like (LOC100777044), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001279041 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum alpha-expansin 2 (CA-EXPA2), mRNA.
PubMed ID: 17110120 NCBI(pubmed)
15474376 NCBI(pubmed)
Status: Known Variant
Name: NM_001317416 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-A4 (LOC100499976), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:14278971..14279280 (+ strand)
Length: 310
Type: five_prime_UTR
Position: Chr05:14279281..14279410 (+ strand)
Length: 130
Type: CDS
Position: Chr05:14280117..14280429 (+ strand)
Length: 313
Type: CDS
Position: Chr05:14280961..14281264 (+ strand)
Length: 304
Type: CDS
Position: Chr05:14281265..14281511 (+ strand)
Length: 247
Type: three_prime_UTR


>Vigan.05G170000.01
TTATTGGTCT ATAAAGTTGG GGAGAAAAGA TAGTTGGGGT TGCATGTGCA GAGGTGTGGC CCACAATATT AGCGGTTGGG
AACCCCAACC AGAACCAGCG CATGTGCACT TCATTTGTCA CTTGTTCAGT GGCTTTCGGG AAAAATAACA CTTTTGTGGA
AGTTAGTAAT AAGAGAAAAG AAAAAAGTAA AAAGATGTTA CTTATAAATA GAGGCCCCCC TTGAAGCACT TGACCTCACA
GCATAGCAAA AGAAAGTGCA CATTCCTCTG TTTTGCTCCC CTGTTTAGGC CTTATCATAA GCTCACAATC ATGCCTCTTC
TCACTCTCAT TGCTGTTCTC TTTCTTAACA TCAATCTCCA AGGTGTTACT GCTGACTATG GTGGTTGGCA GGGTGGTCAT
GCCACTTTCT ATGGTGGGGG TGATGCTTCT GGCACAATGG GTGGAGCATG TGGGTATGGA AATCTGTATA GCCAGGGTTA
TGGAACAGAC ACTGTGGCTC TAAGCACTGC TTTGTTCAAC AATGGCTTAA GCTGTGGATC TTGCTATGAA ATGAGATGTG
ATGATGACCC AAGATGGTGC AAACCTGGCT CTATTATCGT CACTGCTACT AACTTCTGTC CCCCAAATCC ATCTTTGCCA
AACAACAATG GTGGTTGGTG CAACCCACCT CTGCAACACT TTGATATGGC TGAACCTGCC TTCCTTCAGA TTGCAGAATA
TAGAGCTGGA ATTGTCCCAG TGGCCTTCAG AAGGGTTCCT TGTGTGAAGA AGGGAGGAAT AAGGTTCACT ATCAATGGTC
ACTCTTACTT CAACCTAGTT TTGGTCACCA ATGTGGCTGG TGCTGGGGAT GTGCATTCAG TGTCCATCAA AGGGTCCAAA
ACTGGGTGGC AACCCATGTC AAGAAATTGG GGCCAAAACT GGCAGAGCAA CTCCTACCTG AATGGACAAG CCCTTTCTTT
TCAAGTCACC ACCAGTGATG GCAGAACTGT GGCAAGCTAC AATGTGGCAC CAGGCAATTG GCAATTTGGG CAGACCTTCC
AAGGAGGCCA ATTCTAGAGA CCTTATTGCA ATGAGGGTAG AAAACAGTAC AAAAAAAAGT TTGTATACCT ACTATTGTTC
ACCTCACTGG AACAACCATA AAATGTCATA ATAGGTATTG ATCAATTCTT GTAACTGATT CTGAAAGGCC AGTGTTTTAT
TTTATTGGTC TAGAAAGTAG CTGAGGTGTT TATATGGCAC CCGCTGGTCA CTTCACATAT AACATACATA TATGGAGAGA
GAGTTATGTA TTATCTTGTG TGTT

>Vigan.05G170000.01
ATGCCTCTTC TCACTCTCAT TGCTGTTCTC TTTCTTAACA TCAATCTCCA AGGTGTTACT GCTGACTATG GTGGTTGGCA
GGGTGGTCAT GCCACTTTCT ATGGTGGGGG TGATGCTTCT GGCACAATGG GTGGAGCATG TGGGTATGGA AATCTGTATA
GCCAGGGTTA TGGAACAGAC ACTGTGGCTC TAAGCACTGC TTTGTTCAAC AATGGCTTAA GCTGTGGATC TTGCTATGAA
ATGAGATGTG ATGATGACCC AAGATGGTGC AAACCTGGCT CTATTATCGT CACTGCTACT AACTTCTGTC CCCCAAATCC
ATCTTTGCCA AACAACAATG GTGGTTGGTG CAACCCACCT CTGCAACACT TTGATATGGC TGAACCTGCC TTCCTTCAGA
TTGCAGAATA TAGAGCTGGA ATTGTCCCAG TGGCCTTCAG AAGGGTTCCT TGTGTGAAGA AGGGAGGAAT AAGGTTCACT
ATCAATGGTC ACTCTTACTT CAACCTAGTT TTGGTCACCA ATGTGGCTGG TGCTGGGGAT GTGCATTCAG TGTCCATCAA
AGGGTCCAAA ACTGGGTGGC AACCCATGTC AAGAAATTGG GGCCAAAACT GGCAGAGCAA CTCCTACCTG AATGGACAAG
CCCTTTCTTT TCAAGTCACC ACCAGTGATG GCAGAACTGT GGCAAGCTAC AATGTGGCAC CAGGCAATTG GCAATTTGGG
CAGACCTTCC AAGGAGGCCA ATTCTAG

>Vigan.05G170000.01
MPLLTLIAVL FLNINLQGVT ADYGGWQGGH ATFYGGGDAS GTMGGACGYG NLYSQGYGTD TVALSTALFN NGLSCGSCYE
MRCDDDPRWC KPGSIIVTAT NFCPPNPSLP NNNGGWCNPP LQHFDMAEPA FLQIAEYRAG IVPVAFRRVP CVKKGGIRFT
INGHSYFNLV LVTNVAGAGD VHSVSIKGSK TGWQPMSRNW GQNWQSNSYL NGQALSFQVT TSDGRTVASY NVAPGNWQFG
QTFQGGQF*