VIGGS:GBrowse

Vigan.05G171100.01

Basic Information:

Name:	Vigan.05G171100.01 Multiple alignment Variant Information
Position:	Chr05:14432689..14434802 (- strand)
Length:	2114

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MZT0, Glycine max]
GO:	Biological Process: response to oxidative stress (GO:0006979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: peroxidase activity (GO:0004601)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Plant peroxidase (IPR000823)
	Haem peroxidase, plant/fungal/bacterial (IPR002016)
	Haem peroxidase (IPR010255)
	Peroxidases heam-ligand binding site (IPR019793)
	Peroxidase, active site (IPR019794)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.03,61.41,22.89,0.08,22.10,11.51,46.87
Arabidopsis thaliana homolog:	AT5G58400.1

Automatic updates:

Name:	NM_001353239 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative class III peroxidase (GMPER1), mRNA.
PubMed ID:	22548236 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:14432689..14432815 (- strand)
Length:	127
Type:	three_prime_UTR

Position:	Chr05:14432816..14433207 (- strand)
Length:	392
Type:	CDS

Position:	Chr05:14433516..14433684 (- strand)
Length:	169
Type:	CDS

Position:	Chr05:14433790..14433981 (- strand)
Length:	192
Type:	CDS

Position:	Chr05:14434530..14434754 (- strand)
Length:	225
Type:	CDS

Position:	Chr05:14434755..14434802 (- strand)
Length:	48
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G171100.01
TGGAGATATC ACATGCACAG TTTCTCATTC TAATCATCAC ACAAAAACAT GGCTTCCTCT TTCTCTTCAT CAGCTAACAT
TGTTGCATTA GCTGTCTTAT TGTTGCTTCT TACTGCAGGA ACTTCTTCGG CTAACCTCTC AAACAACTTC TATTCTAAGA
GATGTCCCAA TGTTTTCAAC ACAGTCAAAT CTGTCGTTAA ATCTGCTGTG GCAAAAGAAC CTCGCATTGG AGCATCGATT
CTTCGCCTCT TCTTCCACGA TTGCTTTGTT AATGGTTGTG ATGGGTCATT ACTGCTTGAT GACACTGCAT CGTTCTTGGG
AGAGAAAACT GCAGCTGCTA ACAACAATTC AGTGAGAGGT TTTGAAGTAA TTGATGCCAT CAAGTCTAGG GTGGAGAAAC
TGTGCCCTGG TGTTGTCTCC TGTGCTGATA TCTTGGCCAT TGCTTCCCGT GATTCTGTCG TCCTTCTTGG AGGACCATTT
TGGAAAGTGA AGGTTGGAAG AAGGGATTCT AGAACAGCAA ATTTCACTGC TGCTAACACT GGTGTTATTC CACCTCCTAC
CTCTAATCTG ACCAACCTTA TTAACACGTT TCAAGCTCAA GGACTCTCTA CTAAAGACAT GGTTGCCTTA TCTGGAGCTC
ACACAATCGG AAAAGCAAGA TGTACTAGTT TTAGAGATCA CATATACAAT GGAACTAACA TTGACAGAAA ATTTGCACTG
CTGAGGCAGA GAAAGTGTCC TAGAACTAAT GGCACAGGAG ACAATAATCT AGCAGTTCTA GACTTGAGAA CTCCGAAGCA
TTTTGACAAC AACTACTTCA AGAACCTGCT GAACAAAAAG GGACTCCTGA ATTCTGATCA GGTGCTTTTC AATGGTGGAT
CCACTGATTC ACTGGTCAGA ACTTACAGTC AGAATAACAA TGTCTTTGAT TCTGACTTTG TTACAGCAAT GATCAAGATG
GGAGATATCA AACCCTTAAC TGGGTCACGA GGAGAGATTA GGAAGAATTG CAGGAGAGTG AATTAAATAC AAAAGTGATT
TCTGGGGCAT TGGAAAATTG TAATCTGGTT TGTTTAGTTC AATTGCTATT GTAATGTAAT GTGGAATAAA TTGTAAGGCT
CTTTGCCCTC TTACAAACTG AAATGCACCT TGT

[show][hide][copy]CDS

>Vigan.05G171100.01
ATGGCTTCCT CTTTCTCTTC ATCAGCTAAC ATTGTTGCAT TAGCTGTCTT ATTGTTGCTT CTTACTGCAG GAACTTCTTC
GGCTAACCTC TCAAACAACT TCTATTCTAA GAGATGTCCC AATGTTTTCA ACACAGTCAA ATCTGTCGTT AAATCTGCTG
TGGCAAAAGA ACCTCGCATT GGAGCATCGA TTCTTCGCCT CTTCTTCCAC GATTGCTTTG TTAATGGTTG TGATGGGTCA
TTACTGCTTG ATGACACTGC ATCGTTCTTG GGAGAGAAAA CTGCAGCTGC TAACAACAAT TCAGTGAGAG GTTTTGAAGT
AATTGATGCC ATCAAGTCTA GGGTGGAGAA ACTGTGCCCT GGTGTTGTCT CCTGTGCTGA TATCTTGGCC ATTGCTTCCC
GTGATTCTGT CGTCCTTCTT GGAGGACCAT TTTGGAAAGT GAAGGTTGGA AGAAGGGATT CTAGAACAGC AAATTTCACT
GCTGCTAACA CTGGTGTTAT TCCACCTCCT ACCTCTAATC TGACCAACCT TATTAACACG TTTCAAGCTC AAGGACTCTC
TACTAAAGAC ATGGTTGCCT TATCTGGAGC TCACACAATC GGAAAAGCAA GATGTACTAG TTTTAGAGAT CACATATACA
ATGGAACTAA CATTGACAGA AAATTTGCAC TGCTGAGGCA GAGAAAGTGT CCTAGAACTA ATGGCACAGG AGACAATAAT
CTAGCAGTTC TAGACTTGAG AACTCCGAAG CATTTTGACA ACAACTACTT CAAGAACCTG CTGAACAAAA AGGGACTCCT
GAATTCTGAT CAGGTGCTTT TCAATGGTGG ATCCACTGAT TCACTGGTCA GAACTTACAG TCAGAATAAC AATGTCTTTG
ATTCTGACTT TGTTACAGCA ATGATCAAGA TGGGAGATAT CAAACCCTTA ACTGGGTCAC GAGGAGAGAT TAGGAAGAAT
TGCAGGAGAG TGAATTAA

[show][hide][copy]PROTEIN

>Vigan.05G171100.01
MASSFSSSAN IVALAVLLLL LTAGTSSANL SNNFYSKRCP NVFNTVKSVV KSAVAKEPRI GASILRLFFH DCFVNGCDGS
LLLDDTASFL GEKTAAANNN SVRGFEVIDA IKSRVEKLCP GVVSCADILA IASRDSVVLL GGPFWKVKVG RRDSRTANFT
AANTGVIPPP TSNLTNLINT FQAQGLSTKD MVALSGAHTI GKARCTSFRD HIYNGTNIDR KFALLRQRKC PRTNGTGDNN
LAVLDLRTPK HFDNNYFKNL LNKKGLLNSD QVLFNGGSTD SLVRTYSQNN NVFDSDFVTA MIKMGDIKPL TGSRGEIRKN
CRRVN*