VIGGS:GBrowse

Vigan.05G172700.01

Basic Information:

Name:	Vigan.05G172700.01 Multiple alignment Variant Information
Position:	Chr05:14680259..14683225 (+ strand)
Length:	2967

Functional Information:

Description:	Similar to TP53-regulating kinase-like isoform X2. [XP_004500334.1, Cicer arietinum]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: protein tyrosine kinase activity (GO:0004713)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Tyrosine-protein kinase, active site (IPR008266)
	Protein kinase-like domain (IPR011009)
	Serine/threonine-protein kinase Bud32 (IPR022495)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:10.83,21.08,12.28,25.93,12.39,13.85,18.03,11.25

Automatic updates:

Name:	NM_001252913 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max TP53-regulating kinase-like (LOC100782376), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001253085 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max TP53-regulating kinase-like (LOC100813383), mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:14680259..14680561 (+ strand)
Length:	303
Type:	five_prime_UTR

Position:	Chr05:14680562..14680624 (+ strand)
Length:	63
Type:	CDS

Position:	Chr05:14681435..14681548 (+ strand)
Length:	114
Type:	CDS

Position:	Chr05:14681661..14681939 (+ strand)
Length:	279
Type:	CDS

Position:	Chr05:14682050..14682163 (+ strand)
Length:	114
Type:	CDS

Position:	Chr05:14682825..14682897 (+ strand)
Length:	73
Type:	CDS

Position:	Chr05:14682986..14683023 (+ strand)
Length:	38
Type:	CDS

Position:	Chr05:14683024..14683225 (+ strand)
Length:	202
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G172700.01
CCTGAACTTG TGGTGGCTGC AATTAACTTC TTCTTTCAAT TGATGCCAAT TACTGCATGA TATCATTGCA ATTGTTGTTT
ACTATATTCC GTTAACTTCT CGATTAATTG TATTCGAAAT TACTAGATTT ACTCAATTCC AATTCATACT AGAATCAATA
TCTACAGTTA CATGTTTTTT TTTTCTTTTG TCTTCTTTAT TTTTCCGCTG TGTAATCTTT TTTCCCTTTT CGTTTTTGAG
CAGATAGTTG TTGCTGAAGA GAGTTGAAAA CACCAGGAAT TTCACTGCTT AAGAGTTGAA TATATGGAGA CTGAAGCTGA
CTCAAGAGAT ACTTCACTCA TTCTGCTCAA ACAAGGAGCT GAGGCTAGGG TTTTTGAGTC TTCTTTTGTG GGAAGGAAAT
CCGTTGTCAA GGAACGCTTC TCAAAGAAGT ACAGGCATCC AGCTTTGGAT TCAAAATTGA CCCTCAAGCG CTTAAATGCG
GAGGCTAGGT GCATGACCAA AGCAAGGCGA CTTGGTGTTT GTACTCCTGT GCTGTATGCT GTGGATCACG TGTTGCACAC
TTTAACATTT GAATATGTTA CTGGCTCTTC AGTCAAAGAT GTGTTCCTTG AAATCGGGTC ACGTGGGACT GATAAAGAGT
GGCTGGACAA TATAGCATCC CAAATTGGTG AAGCAATTGG GAAGTTACAT GATGGTGGTC TTATTCATGG TGATTTAACA
ACATCAAACA TGTTGTTGAA GAGTGATACC AAGCAGTTGG TTCTTATTGA TTTTGGTTTG AGCTTCACTT CAACTCTTCC
AGAAGATAAA GCTGTTGATT TGTATGTTCT GGAAAGATCT TTTATCTCAA TGCATTCATC ATGTGGGAAT GTGATGGATC
AAATTCTTGC TGCATACAGG AAGTCGTCAA AACAGTGGTC ATCCACATTA AACAAGCTAG CACAAGTGCG ACAAAGAGGG
CGGAAGAGGA CCATGGTTGG ATGAATCTGT CTCAAATTTC GTTTCTTTAT TGAGATATAA AAAACGACAA CTAAGGATGT
TATTAATGTA GTTTATCTTC ACATTCTCTC TCTATTTGTA TTTTTGTAGT GTGCTTATCT TCTACAGTTT ATAAAAAATG
TGATGCCGTA TAAACTTGTG GTTGCCATTT AATCTACATA AAATAGTTTT TTTTTTTTGT TGCATG

[show][hide][copy]CDS

>Vigan.05G172700.01
ATGGAGACTG AAGCTGACTC AAGAGATACT TCACTCATTC TGCTCAAACA AGGAGCTGAG GCTAGGGTTT TTGAGTCTTC
TTTTGTGGGA AGGAAATCCG TTGTCAAGGA ACGCTTCTCA AAGAAGTACA GGCATCCAGC TTTGGATTCA AAATTGACCC
TCAAGCGCTT AAATGCGGAG GCTAGGTGCA TGACCAAAGC AAGGCGACTT GGTGTTTGTA CTCCTGTGCT GTATGCTGTG
GATCACGTGT TGCACACTTT AACATTTGAA TATGTTACTG GCTCTTCAGT CAAAGATGTG TTCCTTGAAA TCGGGTCACG
TGGGACTGAT AAAGAGTGGC TGGACAATAT AGCATCCCAA ATTGGTGAAG CAATTGGGAA GTTACATGAT GGTGGTCTTA
TTCATGGTGA TTTAACAACA TCAAACATGT TGTTGAAGAG TGATACCAAG CAGTTGGTTC TTATTGATTT TGGTTTGAGC
TTCACTTCAA CTCTTCCAGA AGATAAAGCT GTTGATTTGT ATGTTCTGGA AAGATCTTTT ATCTCAATGC ATTCATCATG
TGGGAATGTG ATGGATCAAA TTCTTGCTGC ATACAGGAAG TCGTCAAAAC AGTGGTCATC CACATTAAAC AAGCTAGCAC
AAGTGCGACA AAGAGGGCGG AAGAGGACCA TGGTTGGATG A

[show][hide][copy]PROTEIN

>Vigan.05G172700.01
METEADSRDT SLILLKQGAE ARVFESSFVG RKSVVKERFS KKYRHPALDS KLTLKRLNAE ARCMTKARRL GVCTPVLYAV
DHVLHTLTFE YVTGSSVKDV FLEIGSRGTD KEWLDNIASQ IGEAIGKLHD GGLIHGDLTT SNMLLKSDTK QLVLIDFGLS
FTSTLPEDKA VDLYVLERSF ISMHSSCGNV MDQILAAYRK SSKQWSSTLN KLAQVRQRGR KRTMVG*