GBrowse Details

Vigan.05G181700.01

Basic Information:
Name: Vigan.05G181700.01
Multiple alignment
Variant Information
Position: Chr05:15642301..15645231 (+ strand)
Length: 2931
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7BP04, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.09,49.57,186.37,74.60,144.15,577.15,109.02,158.05
Arabidopsis thaliana homolog: AT2G29960.1
Automatic updates:
Name: NM_001249146 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP24 (CYP24), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP34 (CYP34), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:15642301..15642394 (+ strand)
Length: 94
Type: five_prime_UTR
Position: Chr05:15642395..15642460 (+ strand)
Length: 66
Type: CDS
Position: Chr05:15642675..15642753 (+ strand)
Length: 79
Type: CDS
Position: Chr05:15643673..15643720 (+ strand)
Length: 48
Type: CDS
Position: Chr05:15643811..15643834 (+ strand)
Length: 24
Type: CDS
Position: Chr05:15644240..15644422 (+ strand)
Length: 183
Type: CDS
Position: Chr05:15644519..15644594 (+ strand)
Length: 76
Type: CDS
Position: Chr05:15644833..15644971 (+ strand)
Length: 139
Type: CDS
Position: Chr05:15644972..15645231 (+ strand)
Length: 260
Type: three_prime_UTR


>Vigan.05G181700.01
AATAACTAAT GGAATTCCCA TATAAAGCTA CAATCCCCAA CATCATGGTT ACTCACTCAC TGTCGTAGTA GTAGCGGCGA
AACTGAGATC AGAAATGGCG AAAACGACGT TGTTGTTGCT CTGTACGCTG CTCCTCTTCG GAACCCTGGC TCTCACCCAG
GCGAAGAAAT CAAAGGAGGA ATTGAAGGAA GTGACGAACA AGGTTTTCTT TGATGTTGAG ATCGATGGAA AAGCTGCAGG
TCGTATTGTA ATCGGTCTTT ACGGGAAGGC AGTTCCAAAA ACTGCAGAAA ACTTCCGAGC TCTTTGCACA GGGGAAAAGG
GAATTGGTAA AAATGGAAAG CCTCTCCATT ACAAAGGTAG CACATTCCAC AGAATTATTC CTAGCTTTAT GATCCAAGGA
GGTGATTTTA CACATGGCAA TGGAATGGGC GGAGAATCAA TTTACGGAGA GAAGTTTGCT GATGAGAACT TCAAGTTAAA
GCATACTGGA CCAGGTATTC TGTCAATGGC AAACGCAGGT CCTGATACCA ACGGTTCACA ATTTTTCATC ACAACTGTGA
CAACAAGCTG GTTGGACGGA AGGCATGTTG TTTTTGGTAA AGTTCTTTCT GGAATGGATG TTGTTTACAA GGTTGAAGCT
GAAGGTAGGC AAAGTGGAAC TCCCAAGAGC AAGGTTGTGG TTGCTGACAG CGGTGAACTT CCTCTATAAA ATGTACACGT
CAATTCTCAA CCAGGACTTG TTGAAGCTGT TTCCAGTTTT TTATTCTCTG TACGGACCAC TTGACTTTTC ATAAGCATCT
GCTAATAGGT TTATGGTTAT TTCTGTGTGG AACTTAGTAC ATGAAGTTTT CTCCTAAACT ATAAAACGGG AAATAGCATT
TTTGAAGTGA AATTTATGGA GAAAAGTATG TGAACATGAC TGTCCAAGAT AAATAGCATT TCATAATTCG GAGAATCTTA
ATTTTCCTA

>Vigan.05G181700.01
ATGGCGAAAA CGACGTTGTT GTTGCTCTGT ACGCTGCTCC TCTTCGGAAC CCTGGCTCTC ACCCAGGCGA AGAAATCAAA
GGAGGAATTG AAGGAAGTGA CGAACAAGGT TTTCTTTGAT GTTGAGATCG ATGGAAAAGC TGCAGGTCGT ATTGTAATCG
GTCTTTACGG GAAGGCAGTT CCAAAAACTG CAGAAAACTT CCGAGCTCTT TGCACAGGGG AAAAGGGAAT TGGTAAAAAT
GGAAAGCCTC TCCATTACAA AGGTAGCACA TTCCACAGAA TTATTCCTAG CTTTATGATC CAAGGAGGTG ATTTTACACA
TGGCAATGGA ATGGGCGGAG AATCAATTTA CGGAGAGAAG TTTGCTGATG AGAACTTCAA GTTAAAGCAT ACTGGACCAG
GTATTCTGTC AATGGCAAAC GCAGGTCCTG ATACCAACGG TTCACAATTT TTCATCACAA CTGTGACAAC AAGCTGGTTG
GACGGAAGGC ATGTTGTTTT TGGTAAAGTT CTTTCTGGAA TGGATGTTGT TTACAAGGTT GAAGCTGAAG GTAGGCAAAG
TGGAACTCCC AAGAGCAAGG TTGTGGTTGC TGACAGCGGT GAACTTCCTC TATAA

>Vigan.05G181700.01
MAKTTLLLLC TLLLFGTLAL TQAKKSKEEL KEVTNKVFFD VEIDGKAAGR IVIGLYGKAV PKTAENFRAL CTGEKGIGKN
GKPLHYKGST FHRIIPSFMI QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGILSMAN AGPDTNGSQF FITTVTTSWL
DGRHVVFGKV LSGMDVVYKV EAEGRQSGTP KSKVVVADSG ELPL*