GBrowse Details

Vigan.05G181900.01

Basic Information:
Name: Vigan.05G181900.01
Multiple alignment
Variant Information
Position: Chr05:15658751..15664997 (- strand)
Length: 6247
Functional Information:
Description: Similar to HSP20-like chaperones superfamily protein. [XP_007016106.1, Theobroma cacao]
InterPro: CS domain (IPR007052)
HSP20-like chaperone (IPR008978)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.33,49.64,41.52,45.82,40.47,69.22,41.86,44.25
Arabidopsis thaliana homolog: AT5G58740.1
Automatic updates:
Name: NM_001248048 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499970 (LOC100499970), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249590 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HSP20-like chaperones superfamily protein (LOC100306544), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:15658751..15659139 (- strand)
Length: 389
Type: three_prime_UTR
Position: Chr05:15659140..15659226 (- strand)
Length: 87
Type: CDS
Position: Chr05:15663256..15663398 (- strand)
Length: 143
Type: CDS
Position: Chr05:15664391..15664439 (- strand)
Length: 49
Type: CDS
Position: Chr05:15664544..15664692 (- strand)
Length: 149
Type: CDS
Position: Chr05:15664790..15664838 (- strand)
Length: 49
Type: CDS
Position: Chr05:15664839..15664997 (- strand)
Length: 159
Type: five_prime_UTR


>Vigan.05G181900.01
TAATGTATCT CTTTGATCAG AGATTATAAA CTGCAGATTT TACAGTTCCC AAAAATAATA GCAAAGGAAA CAGCGCGAAC
AAAGGAGAAA GCAGAATAAC TGAATAAGAA TCAGAAGAAA GAAGAAAAAG AAAGAGTGTA GAAAACCCTA GAACGTCAAA
TGGCGGAAAA ATTAGCCCCC GAAAAACGTC ACAGCTTTAT CCACAACGGT GAAAAGGTGT TCGAGTGGGA TCAAACCCTC
GACGAGGTCA ATATTTACAT AAATCTTCCT CCCAACGTCC ATTCCAAGCA ATTCTACTGT AAGATTCAGT CCAAGCACCT
CGAACTTGGC ATCAAAGGCA ATCCCCCCTA TCTCAACCAT GATCTCCCTT GCCCGGTGAA GACAGATTCT TCTTTTTGGA
CCCTAGAGGA TGATATAATG CATATAACAC TGCAGAAGAG AGATAAAGGC CAGACATGGG CTTCTCCAAT ATTAGGTCAG
GGTCAGTTGG ACCCTTACTC TACTGATCTT GAACAGAAGC GTCTCATGCT TCAGAGATTT CAAGAGGAGA ATCCAGGTTT
TGATTTTTCA CAAGCTCAAT TTTCTGGAAA CTGTCCTGAT CCAAGGACCT TCATGGGTGG AATCCGATCA GATTGATGAT
CTTAGATGCT GTTATGTGTA TTTGTCTGCT CTAATATGAT GATCAGATGG TAATAATATG TGATATTTGT CTCCTCATTT
GATGTCTTGC AATTGAGGCA GTCTTGATTG ACTTCCTCTA ATGAATGATG ACTAAACTGT ATTGAGTCGT GGTGACTCTT
GGGCATATAA GCATGTATAT AAAACATGGA GCAATTCTAT AACTGAAGGT ATTTTAAAGT CTTCTGTGGA TCACCAAACC
ATTGAGGAAG AGTTGGTAGC CATATAAAGT ATCAACTTTT AGATTCGATA ATACACAAAA TTGATTCTAC CTTACAAAAA
TCATATAGAT TCTACGAAAT AATTATTTGT TGGTTTCACT TTTACTGTTA AATGAGGTGA AAAAT

>Vigan.05G181900.01
ATGGCGGAAA AATTAGCCCC CGAAAAACGT CACAGCTTTA TCCACAACGG TGAAAAGGTG TTCGAGTGGG ATCAAACCCT
CGACGAGGTC AATATTTACA TAAATCTTCC TCCCAACGTC CATTCCAAGC AATTCTACTG TAAGATTCAG TCCAAGCACC
TCGAACTTGG CATCAAAGGC AATCCCCCCT ATCTCAACCA TGATCTCCCT TGCCCGGTGA AGACAGATTC TTCTTTTTGG
ACCCTAGAGG ATGATATAAT GCATATAACA CTGCAGAAGA GAGATAAAGG CCAGACATGG GCTTCTCCAA TATTAGGTCA
GGGTCAGTTG GACCCTTACT CTACTGATCT TGAACAGAAG CGTCTCATGC TTCAGAGATT TCAAGAGGAG AATCCAGGTT
TTGATTTTTC ACAAGCTCAA TTTTCTGGAA ACTGTCCTGA TCCAAGGACC TTCATGGGTG GAATCCGATC AGATTGA

>Vigan.05G181900.01
MAEKLAPEKR HSFIHNGEKV FEWDQTLDEV NIYINLPPNV HSKQFYCKIQ SKHLELGIKG NPPYLNHDLP CPVKTDSSFW
TLEDDIMHIT LQKRDKGQTW ASPILGQGQL DPYSTDLEQK RLMLQRFQEE NPGFDFSQAQ FSGNCPDPRT FMGGIRSD*