GBrowse Details

Vigan.05G188100.01

Basic Information:
Name: Vigan.05G188100.01
Multiple alignment
Variant Information
Position: Chr05:16451202..16453338 (+ strand)
Length: 2137
Functional Information:
Description: Similar to Proliferating cell nuclear antigen. [A1XCU7, Phaseolus vulgaris]
GO: Biological Process: regulation of DNA replication (GO:0006275)
Cellular Component: PCNA complex (GO:0043626)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA polymerase processivity factor activity (GO:0030337)
InterPro: Proliferating cell nuclear antigen, PCNA (IPR000730)
Proliferating cell nuclear antigen, PCNA, N-terminal (IPR022648)
Proliferating cell nuclear antigen, PCNA, C-terminal (IPR022649)
Proliferating cell nuclear antigen, PCNA, conserved site (IPR022659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.69,15.27,44.53,7.20,70.03,50.76,26.11,19.79
Arabidopsis thaliana homolog: AT1G07370.1
Automatic updates:
Name: NM_001254624 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proliferating cell nuclear antigen (LOC548079), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
1671766 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:16451202..16451380 (+ strand)
Length: 179
Type: five_prime_UTR
Position: Chr05:16451381..16451699 (+ strand)
Length: 319
Type: CDS
Position: Chr05:16452361..16452513 (+ strand)
Length: 153
Type: CDS
Position: Chr05:16452596..16452693 (+ strand)
Length: 98
Type: CDS
Position: Chr05:16452797..16453024 (+ strand)
Length: 228
Type: CDS
Position: Chr05:16453025..16453338 (+ strand)
Length: 314
Type: three_prime_UTR


>Vigan.05G188100.01
CCATTCCCCG CCATTCCCCC AAACGTCCTG GCGGGAATCC AATTATTCTC CCAAATCCCG CCAACTGCTT CCAGAAGCTT
CTCTATATAA AAACCCTTCC CCTCCTTTTC TTTCATTTCC ACTCTAAACC CCCAAACTTT CTCAATATCA AACCCTAATC
CTTTCTTCAG AAGATAAAAA TGTTGGAACT CCGTCTGGTG CAAGGTTCTC TTCTGAAGAA GGTCCTTGAA TCAATCAAGG
AGCTCGTCAC CGATGCTAAC TTCGATTGCT CGTCTACCGG TTTCTCCCTT CAGGCCATGG ATTCCAGCCA TGTGGCCCTT
GTTGCACTTC TCCTCCGATC CGAGGGTTTC GAGCACTATC GCTGTGACCG CAACATGTCC ATGGGTATGA ACCTCAACAA
TATGGCTAAG ATGTTAAAAT GTGCCGGCAA CGATGACATC ATCACCATTA AAGCAGATGA TGGGGGTGAC ACCGTCACTT
TCATGTTCGA AAGTCCCACG CAAGATAAAA TTTCTGATTT TGAAATGAAG CTCATGGATA TTGATAGTGA GCATCTTGGG
ATACCGGAGG CAGAGTATCA TGCCATTGTG AAAATGCCAT CTTCTGAGTT TGCAAGGATC TGCAGGGATC TCAGCAGCAT
CGGGGATACT GTTGTCATCT CGGTCACCAA GGAGGGTGTG AAGTTTTCCA CCAAAGGAGA TATTGGATCT GCAAACATAG
TTTGCAGGCA AAATACTTCT GTGGATAAGC CTGAAGAAGC TACTGTTATT GACATGAATG AGCCAGTGTC ATTGACATTT
GCATTGCGTT ATATGAACTC TTTTACAAAG GCAACACCTT TGTCCAACAC AGTTTCCATT AGTTTGTCAA ATGAGCTGCC
AGTTGTTGTT GAATACAAGA TTGCTGAAAT GGGTTATGTC CGGTTCTATT TGGCTCCCAA GATAGAAGAG GATGAAGAAG
AGAAACCTCA AGTTTAACCA CTATTTGATG TTGGGTTAGG TGATTAGGAT TTTTCATCCG TCGAACTTTG TAGTTTTCTT
TAATACATTT CTCTAGAAGA CACTTAAACT TTGAGCAGTG AATTTAGGAT TTAAGTATTT TACCCCTATT GTTGCCATCA
GGCCGCTTTA TTTTGCCTAG ATTTTGTTGT TCAGAACAAT GTGAAAGTAT AACAATTAGC TATGCAAATT TTCCCGCTGA
TGTATTTTTA GTGTCTGGGT ACTGTTTTCA AAATGTTCAC AAAGTACTGG TTTATCTAAG CAGAACATGA ACATATGGTA
TGTTAATAAG A

>Vigan.05G188100.01
ATGTTGGAAC TCCGTCTGGT GCAAGGTTCT CTTCTGAAGA AGGTCCTTGA ATCAATCAAG GAGCTCGTCA CCGATGCTAA
CTTCGATTGC TCGTCTACCG GTTTCTCCCT TCAGGCCATG GATTCCAGCC ATGTGGCCCT TGTTGCACTT CTCCTCCGAT
CCGAGGGTTT CGAGCACTAT CGCTGTGACC GCAACATGTC CATGGGTATG AACCTCAACA ATATGGCTAA GATGTTAAAA
TGTGCCGGCA ACGATGACAT CATCACCATT AAAGCAGATG ATGGGGGTGA CACCGTCACT TTCATGTTCG AAAGTCCCAC
GCAAGATAAA ATTTCTGATT TTGAAATGAA GCTCATGGAT ATTGATAGTG AGCATCTTGG GATACCGGAG GCAGAGTATC
ATGCCATTGT GAAAATGCCA TCTTCTGAGT TTGCAAGGAT CTGCAGGGAT CTCAGCAGCA TCGGGGATAC TGTTGTCATC
TCGGTCACCA AGGAGGGTGT GAAGTTTTCC ACCAAAGGAG ATATTGGATC TGCAAACATA GTTTGCAGGC AAAATACTTC
TGTGGATAAG CCTGAAGAAG CTACTGTTAT TGACATGAAT GAGCCAGTGT CATTGACATT TGCATTGCGT TATATGAACT
CTTTTACAAA GGCAACACCT TTGTCCAACA CAGTTTCCAT TAGTTTGTCA AATGAGCTGC CAGTTGTTGT TGAATACAAG
ATTGCTGAAA TGGGTTATGT CCGGTTCTAT TTGGCTCCCA AGATAGAAGA GGATGAAGAA GAGAAACCTC AAGTTTAA

>Vigan.05G188100.01
MLELRLVQGS LLKKVLESIK ELVTDANFDC SSTGFSLQAM DSSHVALVAL LLRSEGFEHY RCDRNMSMGM NLNNMAKMLK
CAGNDDIITI KADDGGDTVT FMFESPTQDK ISDFEMKLMD IDSEHLGIPE AEYHAIVKMP SSEFARICRD LSSIGDTVVI
SVTKEGVKFS TKGDIGSANI VCRQNTSVDK PEEATVIDMN EPVSLTFALR YMNSFTKATP LSNTVSISLS NELPVVVEYK
IAEMGYVRFY LAPKIEEDEE EKPQV*