GBrowse Details

Vigan.05G190000.01

Basic Information:
Name: Vigan.05G190000.01
Multiple alignment
Variant Information
Position: Chr05:16780760..16784044 (- strand)
Length: 3285
Functional Information:
Description: Similar to Chaperonin-like RbcX protein isoform 1. [XP_007015059.1, Theobroma cacao]
InterPro: Chaperonin-like RbcX (IPR003435)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.26,0.79,28.51,213.76,1.14,11.04,0.41,75.28
Arabidopsis thaliana homolog: AT5G19855.1
Automatic updates:
Name: NM_001249711 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RbcX domain-containing protein (LOC100526969), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254138 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100786585 (LOC100786585), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:16780760..16780988 (- strand)
Length: 229
Type: three_prime_UTR
Position: Chr05:16780989..16781111 (- strand)
Length: 123
Type: CDS
Position: Chr05:16781594..16781659 (- strand)
Length: 66
Type: CDS
Position: Chr05:16781792..16781849 (- strand)
Length: 58
Type: CDS
Position: Chr05:16782287..16782378 (- strand)
Length: 92
Type: CDS
Position: Chr05:16783344..16783670 (- strand)
Length: 327
Type: CDS
Position: Chr05:16783671..16784044 (- strand)
Length: 374
Type: five_prime_UTR


>Vigan.05G190000.01
GAATCCTTCA CTTTTTTTCT TTTTTCTATT TTCTGTTGGA CAGTTTTGGA CCTCAAAAAT TTGTCTGGTG AAGGTTCGCT
CCCACCCTTC AAAAATCTCA CCTCTACAGT TTTAGTTTAC TTTTCCTTGC ACCCAAAAGC TTGCTACTTC TCTTGTTCAA
CCTTCCCACA AACACTGCAT GCGTCTTTGA CCACACCAAG TTCTTCAATT TCCAATTTTC CTGGTCACCC TCTATTCCTC
TTCCTCCCTA GCTGTACTTT CTGTTGAAGG GTATCTCTAT TTATAGAGTT CCATTGTCTT TTGAGGCAAT TTTGAACCTT
TGGTTTGTGT GTTCTTGAAG AGGTTTTCTG TGGAGATTGG AATAGTGAGA GAGGATGGTG GGTGCTCTGT CTGTTGTGGG
ATCATCAGTG GTGGAATCTC ACACTGGTCC TTGTTTGTGT GTGGATGCTC TTCCCACAAC AACTAGTGTC AATCTGAAGA
GTGGTGGAGA TGTTGTTCTG TGCAAGAATT TGATGGGAAG GAAGCACTTG ACGAAGCATG GTGGAGGAAC CATGAAATTG
AGCAGTTCTT TCATTGATCC TGGAAGAGAG TGGAGACTCT TTGTTAGCAG AAGTTGCAAG AGGCAGCGTA AGGATAGGAG
CGTCGCCATT GTCAACGAGC TTGGAGGCCA ATACGAAGAA GGTTTTGAAG ATGTTAAAAC GCAAATGCTC AACTATTTCA
CATACAAGGC TGTGAGGACT GTTCTTCATC AGTTGTATGA GATGAACCCT CCTAAATATA CGTGGTTCTA CAATTTTGTT
GCATCAAACA AACCAAGAGA TGGAAAACGC TTTATTCGAT CCCTTGGGAA GGAGCAACAA GAGCTTGCGG AAAGAGTGAT
GCTAACTCGG CTTCACCTTT ATAGTAAATG GGTCAAGAAA TGTGACCATG CAGAGATATA CAAGGAAATC TCTGATGAAA
ACTTGGAGTT AATGAGGGAA CGGCTGATGG AGACAGTAAT ATGGCCCTCA GATGACACAA ACAGTGAAAA AATTGGCTGA
TAATTCTTCT CACTTTTTAG TTTCTGTCTT GAGCCTCTTC CTAGTCTAGG TATATTTTTT TGTTTCAACA TCAATCTGTT
TTGCTTCCAA AATTGTTATT TCTGTCGTTT TCCTTTAATA GGATTCTCAG TTTTACGTTA TGTAAATTAT GTATATAATT
GCACCTCGTT AAATACACAG TCCATTATAT ATCGGTAGTT TCAAATGAAT TTGCAAGTGT ATGAAAATT

>Vigan.05G190000.01
ATGGTGGGTG CTCTGTCTGT TGTGGGATCA TCAGTGGTGG AATCTCACAC TGGTCCTTGT TTGTGTGTGG ATGCTCTTCC
CACAACAACT AGTGTCAATC TGAAGAGTGG TGGAGATGTT GTTCTGTGCA AGAATTTGAT GGGAAGGAAG CACTTGACGA
AGCATGGTGG AGGAACCATG AAATTGAGCA GTTCTTTCAT TGATCCTGGA AGAGAGTGGA GACTCTTTGT TAGCAGAAGT
TGCAAGAGGC AGCGTAAGGA TAGGAGCGTC GCCATTGTCA ACGAGCTTGG AGGCCAATAC GAAGAAGGTT TTGAAGATGT
TAAAACGCAA ATGCTCAACT ATTTCACATA CAAGGCTGTG AGGACTGTTC TTCATCAGTT GTATGAGATG AACCCTCCTA
AATATACGTG GTTCTACAAT TTTGTTGCAT CAAACAAACC AAGAGATGGA AAACGCTTTA TTCGATCCCT TGGGAAGGAG
CAACAAGAGC TTGCGGAAAG AGTGATGCTA ACTCGGCTTC ACCTTTATAG TAAATGGGTC AAGAAATGTG ACCATGCAGA
GATATACAAG GAAATCTCTG ATGAAAACTT GGAGTTAATG AGGGAACGGC TGATGGAGAC AGTAATATGG CCCTCAGATG
ACACAAACAG TGAAAAAATT GGCTGA

>Vigan.05G190000.01
MVGALSVVGS SVVESHTGPC LCVDALPTTT SVNLKSGGDV VLCKNLMGRK HLTKHGGGTM KLSSSFIDPG REWRLFVSRS
CKRQRKDRSV AIVNELGGQY EEGFEDVKTQ MLNYFTYKAV RTVLHQLYEM NPPKYTWFYN FVASNKPRDG KRFIRSLGKE
QQELAERVML TRLHLYSKWV KKCDHAEIYK EISDENLELM RERLMETVIW PSDDTNSEKI G*