GBrowse Details

Vigan.05G192300.01

Basic Information:
Name: Vigan.05G192300.01
Multiple alignment
Variant Information
Position: Chr05:17212439..17214149 (+ strand)
Length: 1711
Functional Information:
Description: Similar to Uncharacterized protein. [I1K170, Glycine max]
GO: Cellular Component: nucleolus (GO:0005730)
Molecular Function: RNA binding (GO:0003723)
InterPro: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (IPR002415)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038)
Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:35.38,56.49,32.39,20.19,60.11,96.33,64.29,22.47
Arabidopsis thaliana homolog: AT5G08180.1
Automatic updates:
Name: NM_001248398 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499993 (LOC100499993), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249531 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305515 (LOC100305515), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:17212439..17212544 (+ strand)
Length: 106
Type: five_prime_UTR
Position: Chr05:17212545..17212680 (+ strand)
Length: 136
Type: CDS
Position: Chr05:17212748..17212817 (+ strand)
Length: 70
Type: CDS
Position: Chr05:17212921..17213026 (+ strand)
Length: 106
Type: CDS
Position: Chr05:17213575..17213736 (+ strand)
Length: 162
Type: CDS
Position: Chr05:17213737..17214149 (+ strand)
Length: 413
Type: three_prime_UTR


>Vigan.05G192300.01
GCCAGACCCA AACATGAATC GAGTAAATAA ACCCTAGCTG GAGGGTTTAA GGGTTGATTG TTGATTTTTC AATTGAGAGC
GCATAGTGAG TGAGAGAGAG AGAGAGATGG GAAGCGACAG CGAGACAGAG AGATCGGTGC AAAAGGAGAA GGAGAAGAAG
AAGATGCCGT CTCTAGCTCC CATAGCTAAG CCGCTTGCCG GCAAGAAGCT TTGCAAGCGT ACCCTTAAAC TTGTTCGCAG
AGCCGCCGAA CACAAATGCT TAAAGAGAGG AGTCAAGGAG GTCGTTAAAA GCATTAGGAG AGGTCATAAA GGATTCTGTG
TTATCGCTGG CAACATTTCA CCCATTGATG TCATCACCCA TGTTCCCGTT CTCTGTGAGG AGTCTGACAT TCCATACATA
TATGTCCCAT CCAAAGAAGA TCTTGCTGGT GCAGGAGCAA CAAAGAGGCC TACTTGCTGT GTTTTGGTAC AGACGAAACC
TGCAAAGGGT GAATTAGAGC AAGGGGAACA AGAGAAACTA AAGTCTGACT ATGATCAAGT TGTGTCGGAA GTTAAGGAGC
TTGCAGCTTC ACTTTTTTGA AACAACCACA CATGTATCTG TATTGTTTGT TCTAGATGGA TTCGCATGTG GTGGTAGTGT
ATCATACAAT GAATTCATGT ATGAGTTTAA TTATTTTCCT ATCTTGCTTA TCAGTTTCTT ATCATATAGT TTACCACTAC
CTTGATCATT TCACTTGGTT CATCCTTTTC CCACGAGGAA AGGCTGAAAT AATCCTGATT AGAATTTAGA ATGTTTTAGT
TGGTCATAAT TTTCTACCAT CTATACAGGG TTTTGGATAT CCTTTTTCTT TCTTTAGCTC ATGAATTTTA GAAGAGGATG
GTTTGCGAAA AAATGTTTTT GAAACTGGTT TTTTCATGTA CCCTAGAAGG GGGGGTGTTG AATTAAAAAG GACTGGTTTT
TACATAATCC CTCAATGCCT GAGTTAGCAG TAG

>Vigan.05G192300.01
ATGGGAAGCG ACAGCGAGAC AGAGAGATCG GTGCAAAAGG AGAAGGAGAA GAAGAAGATG CCGTCTCTAG CTCCCATAGC
TAAGCCGCTT GCCGGCAAGA AGCTTTGCAA GCGTACCCTT AAACTTGTTC GCAGAGCCGC CGAACACAAA TGCTTAAAGA
GAGGAGTCAA GGAGGTCGTT AAAAGCATTA GGAGAGGTCA TAAAGGATTC TGTGTTATCG CTGGCAACAT TTCACCCATT
GATGTCATCA CCCATGTTCC CGTTCTCTGT GAGGAGTCTG ACATTCCATA CATATATGTC CCATCCAAAG AAGATCTTGC
TGGTGCAGGA GCAACAAAGA GGCCTACTTG CTGTGTTTTG GTACAGACGA AACCTGCAAA GGGTGAATTA GAGCAAGGGG
AACAAGAGAA ACTAAAGTCT GACTATGATC AAGTTGTGTC GGAAGTTAAG GAGCTTGCAG CTTCACTTTT TTGA

>Vigan.05G192300.01
MGSDSETERS VQKEKEKKKM PSLAPIAKPL AGKKLCKRTL KLVRRAAEHK CLKRGVKEVV KSIRRGHKGF CVIAGNISPI
DVITHVPVLC EESDIPYIYV PSKEDLAGAG ATKRPTCCVL VQTKPAKGEL EQGEQEKLKS DYDQVVSEVK ELAASLF*