GBrowse Details

Vigan.05G195800.01

Basic Information:
Name: Vigan.05G195800.01
Multiple alignment
Variant Information
Position: Chr05:17579554..17586896 (- strand)
Length: 7343
Functional Information:
Description: Similar to Transport protein SFT2-like protein. [T2DPE0, Phaseolus vulgaris]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Vesicle transport protein, Got1/SFT2-like (IPR007305)
Vesicle transport protein, SFT2-like (IPR011691)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.72,13.79,22.77,12.92,22.16,39.34,26.06,20.30
Arabidopsis thaliana homolog: AT4G26550.1
Automatic updates:
Name: NM_001251523 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306412 (LOC100306412), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:17579554..17579856 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr05:17579857..17579967 (- strand)
Length: 111
Type: CDS
Position: Chr05:17580327..17580431 (- strand)
Length: 105
Type: CDS
Position: Chr05:17580580..17580847 (- strand)
Length: 268
Type: CDS
Position: Chr05:17586523..17586710 (- strand)
Length: 188
Type: CDS
Position: Chr05:17586711..17586896 (- strand)
Length: 186
Type: five_prime_UTR


>Vigan.05G195800.01
AGGTATTGTA GCAATCGAGT GGTGATTTCA ACAATAGAGA GCAGAAGCAG CTATTCAATT CTCAACAACC GGAAGCACTC
AGCACACAAC AGATAAATCC ACACATCAAA TCGCAAATCC TAATTAATTC CATTTCCCCC TTTTCTCCCT CCAAGCAATC
ATTCGTAGTT GGAATTGGTG ACCAAAATGC AGGGGTGGTT CTCGGCACCG AGCGGTGGTG AGGAGGAGGC GAAGCCCTCC
TCGTCGTTGC TTGCCGATTG GAACTCCTAT GCCTCTAATC AATCCTCCCA GGACAGCTCC AGTTTGGGTC TTTCCTTCGA
TCTCGAATCC GCCGTCAGGT CGGCCAATGA CACCGTTTCC GGCACCTTCA GCGTGGTTTC TAAAGGCGTG AGAGATCTAC
CTGGCAATTT TCAGTCTGCT ACTAGTAATG TGCCTTCTGG CAAAGCACTT GTATATTTTG GTTTGCTTCT GGCAAGTGGA
GTCTTCTTTG TTTTCATAGC ATTTACATTA TTCCTGCCCG TCATGGTGGT TATGCCCCAA AAGTTTGCTA TATGCTTTAC
ACTTGGCTGT GGATTTATTA TTGGATCATT CTTTGCTCTC AAGGGTCCAA AAAATCAGCT TACTCACATG ATGTCAAGGG
AGAGGCTCCC TTTCACATTG GCTTTTCTAG GCAGTATGAT TGGTACCATA TATGTATCAA TGGTGCTTCA TAGCTACATC
CTCTCTGTGG TATTCTCTGT AGTGCAGGTT CTCTCACTTG GCTATTATTC TATTTCATAC TTTCCTGGTG GATCTGCTGG
AATGAAGTTT CTAACTTCTG CTCTTACTTC TTCAATAATG AAATGTTTTG GGCGGTGACC AATTTTTTGG TTGACAGTTG
AGTTGAGTTC GGACCAGTGT CTATAGAGTA GTTGACTTGT AAATTTATCT ATCTGCTGAA GAGGCCTAAG AATATTACTG
GATTGAAGCA TCATCTAACA ATTTCCTAGG GTTCAACGTT TATTGCCACT GCCCTATCTG AATGGGAAAA AAAAAACTGA
TTTGCCTCTT CGCCTCATGT TTGTGAAAAA CAAAATAACA CTGTCTGATT GATGAAGTTA ATTCTACCTG TGTTGCTCCC
TTTTACAGTT GGAATTTGAA ATAATCTTTG TTTGTTTGCG A

>Vigan.05G195800.01
ATGCAGGGGT GGTTCTCGGC ACCGAGCGGT GGTGAGGAGG AGGCGAAGCC CTCCTCGTCG TTGCTTGCCG ATTGGAACTC
CTATGCCTCT AATCAATCCT CCCAGGACAG CTCCAGTTTG GGTCTTTCCT TCGATCTCGA ATCCGCCGTC AGGTCGGCCA
ATGACACCGT TTCCGGCACC TTCAGCGTGG TTTCTAAAGG CGTGAGAGAT CTACCTGGCA ATTTTCAGTC TGCTACTAGT
AATGTGCCTT CTGGCAAAGC ACTTGTATAT TTTGGTTTGC TTCTGGCAAG TGGAGTCTTC TTTGTTTTCA TAGCATTTAC
ATTATTCCTG CCCGTCATGG TGGTTATGCC CCAAAAGTTT GCTATATGCT TTACACTTGG CTGTGGATTT ATTATTGGAT
CATTCTTTGC TCTCAAGGGT CCAAAAAATC AGCTTACTCA CATGATGTCA AGGGAGAGGC TCCCTTTCAC ATTGGCTTTT
CTAGGCAGTA TGATTGGTAC CATATATGTA TCAATGGTGC TTCATAGCTA CATCCTCTCT GTGGTATTCT CTGTAGTGCA
GGTTCTCTCA CTTGGCTATT ATTCTATTTC ATACTTTCCT GGTGGATCTG CTGGAATGAA GTTTCTAACT TCTGCTCTTA
CTTCTTCAAT AATGAAATGT TTTGGGCGGT GA

>Vigan.05G195800.01
MQGWFSAPSG GEEEAKPSSS LLADWNSYAS NQSSQDSSSL GLSFDLESAV RSANDTVSGT FSVVSKGVRD LPGNFQSATS
NVPSGKALVY FGLLLASGVF FVFIAFTLFL PVMVVMPQKF AICFTLGCGF IIGSFFALKG PKNQLTHMMS RERLPFTLAF
LGSMIGTIYV SMVLHSYILS VVFSVVQVLS LGYYSISYFP GGSAGMKFLT SALTSSIMKC FGR*