GBrowse Details

Vigan.05G204000.01

Basic Information:
Name: Vigan.05G204000.01
Multiple alignment
Variant Information
Position: Chr05:18764105..18768682 (+ strand)
Length: 4578
Functional Information:
Description: Similar to 30S ribosomal protein S10, chloroplastic-like. [XP_004506689.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S10 (IPR001848)
Ribosomal protein S10, conserved site (IPR018268)
Ribosomal protein S10 domain (IPR027486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:277.60,160.62,35.23,112.33,12.50,55.35,11.26,21.39
Arabidopsis thaliana homolog: AT3G13120.1
Automatic updates:
Name: NM_001249510 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526953 (LOC100526953), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249563 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 30S ribosomal protein S10, chloroplastic (LOC100306286), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:18764105..18764159 (+ strand)
Length: 55
Type: five_prime_UTR
Position: Chr05:18764160..18764405 (+ strand)
Length: 246
Type: CDS
Position: Chr05:18765037..18765096 (+ strand)
Length: 60
Type: CDS
Position: Chr05:18767962..18768273 (+ strand)
Length: 312
Type: CDS
Position: Chr05:18768274..18768682 (+ strand)
Length: 409
Type: three_prime_UTR


>Vigan.05G204000.01
GAGCTTGACA CGAGTTCGTT CATTCAGAGT GAGATAGAAT TGTTCAAGAG CTACAATGGC GGTTTCTTCT CTCTCTGTTA
CTCCTCTTTC TCTCTCCAAT TCTTCTCCCT CTCTATCTTC CAAGCTAAAG TCTCCATCTT TGTGCCTTTT CTCGGGTAAC
TCCTTGAGGG TCACATGCCC CAAGCCTCTG CAGTCATCAA CTGTGGTTCA TGTTGCTCCG GAAGTGTTGG ATTCTTCCCC
TGATCCCTTG GACCCACCTC CAGAAACCCT TGATGATGAC TCTGAACCCA CCACTTATCA GGTTGGTGAA TTGGGGACTC
CGAGCACTTC GGCAATTAGC ATTGGCGCTG ATGCAGATGC AATGGCACCA AAGCAGAAGA TTAGAATCAA GCTTAGATCT
TACTGGGTGC CCTTGATTGA GGATTCCTGC AAGCAGATAT TAGATGCAGC AAGGACTACC AATGCAAAAA CGATGGGACC
TGTGCCATTG CCAACCAAGA GGCGAGTCTA CTGTGTTCTT AAATCCCCTC ACGTACACAA GGATGCTCGG TTTCATTTCG
AGATCAGAAC TCACCAGCGT CTCATTGATA TTCTGTATCC TACTGCTCAA ACAATAGATT CACTTATGCA ACTAGATCTT
CCTGCTGGTG TTGATGTTGA GGTCAAGCTC TAGAGAGATT TTCTTCTTAG GTTGCTAACT ATCTTGAATT TGAGGGAAGT
TCAACTTGTT ATCAATAGCC AAATACATTA GTAGATATCA TGTATTCGCT GCCTGAACTT TACTTGTGTG GACGATGCAA
AATATTCTTT TGTTTGCTTC ACATTCTGTC TTCAACAAGG TTTTCATTTA GTCTATCCCC GAGTTCCTGT TATTGCACAG
ATATGTGTAT ATCATATTTA ATGTTATGTA ATTCTGATAT GTCACAATGT TTTATTTTTC CTGTTAAGTT ATGCTTAAGA
ATTTCTTTTG ATTGATTTCA AAATTGAATA AGATGCCGTC CTTGTAGTTT TTATTAAGGG AAGGAATTGT TGAGGGTGTG
TTTGATTCGA GAGACCCTTT TCTTGTTAAC TATTTTCACA AA

>Vigan.05G204000.01
ATGGCGGTTT CTTCTCTCTC TGTTACTCCT CTTTCTCTCT CCAATTCTTC TCCCTCTCTA TCTTCCAAGC TAAAGTCTCC
ATCTTTGTGC CTTTTCTCGG GTAACTCCTT GAGGGTCACA TGCCCCAAGC CTCTGCAGTC ATCAACTGTG GTTCATGTTG
CTCCGGAAGT GTTGGATTCT TCCCCTGATC CCTTGGACCC ACCTCCAGAA ACCCTTGATG ATGACTCTGA ACCCACCACT
TATCAGGTTG GTGAATTGGG GACTCCGAGC ACTTCGGCAA TTAGCATTGG CGCTGATGCA GATGCAATGG CACCAAAGCA
GAAGATTAGA ATCAAGCTTA GATCTTACTG GGTGCCCTTG ATTGAGGATT CCTGCAAGCA GATATTAGAT GCAGCAAGGA
CTACCAATGC AAAAACGATG GGACCTGTGC CATTGCCAAC CAAGAGGCGA GTCTACTGTG TTCTTAAATC CCCTCACGTA
CACAAGGATG CTCGGTTTCA TTTCGAGATC AGAACTCACC AGCGTCTCAT TGATATTCTG TATCCTACTG CTCAAACAAT
AGATTCACTT ATGCAACTAG ATCTTCCTGC TGGTGTTGAT GTTGAGGTCA AGCTCTAG

>Vigan.05G204000.01
MAVSSLSVTP LSLSNSSPSL SSKLKSPSLC LFSGNSLRVT CPKPLQSSTV VHVAPEVLDS SPDPLDPPPE TLDDDSEPTT
YQVGELGTPS TSAISIGADA DAMAPKQKIR IKLRSYWVPL IEDSCKQILD AARTTNAKTM GPVPLPTKRR VYCVLKSPHV
HKDARFHFEI RTHQRLIDIL YPTAQTIDSL MQLDLPAGVD VEVKL*