VIGGS:GBrowse

Vigan.05G206000.01

Basic Information:

Name:	Vigan.05G206000.01 Multiple alignment Variant Information
Position:	Chr05:19096956..19107409 (- strand)
Length:	10454

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KYM4, Glycine max]
GO:	Biological Process: transcription, DNA-dependent (GO:0006351)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
	Molecular Function: protein dimerization activity (GO:0046983)
InterPro:	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (IPR001514)
	DNA-directed RNA polymerase, RBP11-like dimerisation domain (IPR009025)
	DNA-directed RNA polymerase, insert domain (IPR011262)
	DNA-directed RNA polymerase, RpoA/D/Rpb3-type (IPR011263)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:34.84,27.12,7.08,10.71,18.50,12.98,15.62,9.66
Arabidopsis thaliana homolog:	AT1G60620.1

Automatic updates:

Name:	NM_001255723 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max DNA-directed RNA polymerases I and III subunit RPAC1-like (LOC100786622), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:19096956..19097157 (- strand)
Length:	202
Type:	three_prime_UTR

Position:	Chr05:19097158..19097261 (- strand)
Length:	104
Type:	CDS

Position:	Chr05:19097805..19097924 (- strand)
Length:	120
Type:	CDS

Position:	Chr05:19098085..19098178 (- strand)
Length:	94
Type:	CDS

Position:	Chr05:19098300..19098395 (- strand)
Length:	96
Type:	CDS

Position:	Chr05:19099546..19099739 (- strand)
Length:	194
Type:	CDS

Position:	Chr05:19099867..19099953 (- strand)
Length:	87
Type:	CDS

Position:	Chr05:19100111..19100237 (- strand)
Length:	127
Type:	CDS

Position:	Chr05:19106674..19106859 (- strand)
Length:	186
Type:	CDS

Position:	Chr05:19107093..19107245 (- strand)
Length:	153
Type:	CDS

Position:	Chr05:19107246..19107409 (- strand)
Length:	164
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G206000.01
AAAAACATAA GACGAAGAGG TTCGTCCTGT AAACCCTAAA CCCTAAATAT CTCAGTTCCT TCTCAATTCA CATAACCGCT
CTGCTACTCC TTTCAATTCC TTTCAAGTGC TAACCCGACA GACCACTGGA AAGCTAAGAA GGAAGAGAAA GAAGCACAAC
AAAGATGTCG GAGGAAGACG AATCAATGGG GGAACAGAGT GACAATAAAT CAGGACTTGA TTTTATACTG AGTTTAGAAG
ATGTTCCATC AAAGATCCCT CCACACCTTG AGCTTTTCAA AACGCGTGTT ATGTGTAACA GCGATGCTCC TATACATACG
GATACTATAC ATTATTCTGG CGCTTATGCG GTTTTGGGAG TTGATAATAG TCAGCAGTTT GATAGCTTCC GTAAAAACTT
CAAAGTTGAA GTGAAGCGGC TTACTGATAG TGAGATGGAG TTTGATATGA TTGGTATTGA TCCAGCAATT GCCAACGCAT
TTCGAAGAAT TCTTATATCA GAGGTTCCAA CAATGGCTAT TGAAAGAGTA TATATCGCAA ACAATACATC AGTTGTACAA
GATGAAGTTC TTTCCCATAG ATTGGGTCTT ATTCCAATTC GTGTTGATCC CAGGCTATTT GAATATCCAG ATAATGCAGG
AGATGACAAT AATGAAAGGA ACACCATTGT CTTTGGGCTA CATGTACGAT GTCAAGTCGG TCAACCTCGA ATTACTGTGA
AATCCGATAA ACTAAAGTGG TTGCCTAATG GGAGCGAGCT TCCCTGTGAA GATGTCAAAC CAAATACATC TTCAAAGCCA
AAGACGTTTA CATCTTTTAC TTGCAGCCAA AATTCACTTC CTGGATTTCC CAGCAATTCA ATTGATCTTA CAGATTCAGA
TATTATATTA GCTAAACTTG GACCTGGTCA GGAAATTGAA CTTGAAGCAC ATGCAGTTAA AGGCATTGGT AGGACACATG
CAAAATGGTC CCCAGTTGCC ACTGCTTGGT ATCGGATGCT TCCGGAGGTT GTACTCTTGG AAGATATTGT GGATGAGCAG
GCTGAAGAAT TAGTAAAGAA ATGTCAACCT AATGTGTTTG ATATTGAAGA CATTGGAAAA GGTAAAAGAA GGGCAACAGT
AGCCAGACCA CGGAACTGTA CTTTGTGTAG GGAATGCATC AGAGGAGGCA AAGAATGGGA AGATCGGATA TCAATACGTC
GCGTTAAACA TCATTTCATT TTTTGCATTG AATCAACCGG AGCATTACCA CCTGAAGTGC TATTTACCGA AGCTGTGAAG
ATTTTGGAAG ATAAATGTGA ACGTGTGATT ACTGAGTTTT CTTGATTCTT CTTTTTGTTA TGTCTTAATC TTATAATCAA
TGAAATGGAT AAGGGTATTC TATGCCCAGT TCTGATATGA TTCATTTTTT TTAGGACTCC TTATAAATTA ATTCCCTTTC
CTTACTCATA GTTAAGCTTT GGATGTCTGC ATTGCCACGA TGTTTTATAT CCAGTGGTAG TTTAACTTAA TATAATGGAT
TTTAGTT

[show][hide][copy]CDS

>Vigan.05G206000.01
ATGTCGGAGG AAGACGAATC AATGGGGGAA CAGAGTGACA ATAAATCAGG ACTTGATTTT ATACTGAGTT TAGAAGATGT
TCCATCAAAG ATCCCTCCAC ACCTTGAGCT TTTCAAAACG CGTGTTATGT GTAACAGCGA TGCTCCTATA CATACGGATA
CTATACATTA TTCTGGCGCT TATGCGGTTT TGGGAGTTGA TAATAGTCAG CAGTTTGATA GCTTCCGTAA AAACTTCAAA
GTTGAAGTGA AGCGGCTTAC TGATAGTGAG ATGGAGTTTG ATATGATTGG TATTGATCCA GCAATTGCCA ACGCATTTCG
AAGAATTCTT ATATCAGAGG TTCCAACAAT GGCTATTGAA AGAGTATATA TCGCAAACAA TACATCAGTT GTACAAGATG
AAGTTCTTTC CCATAGATTG GGTCTTATTC CAATTCGTGT TGATCCCAGG CTATTTGAAT ATCCAGATAA TGCAGGAGAT
GACAATAATG AAAGGAACAC CATTGTCTTT GGGCTACATG TACGATGTCA AGTCGGTCAA CCTCGAATTA CTGTGAAATC
CGATAAACTA AAGTGGTTGC CTAATGGGAG CGAGCTTCCC TGTGAAGATG TCAAACCAAA TACATCTTCA AAGCCAAAGA
CGTTTACATC TTTTACTTGC AGCCAAAATT CACTTCCTGG ATTTCCCAGC AATTCAATTG ATCTTACAGA TTCAGATATT
ATATTAGCTA AACTTGGACC TGGTCAGGAA ATTGAACTTG AAGCACATGC AGTTAAAGGC ATTGGTAGGA CACATGCAAA
ATGGTCCCCA GTTGCCACTG CTTGGTATCG GATGCTTCCG GAGGTTGTAC TCTTGGAAGA TATTGTGGAT GAGCAGGCTG
AAGAATTAGT AAAGAAATGT CAACCTAATG TGTTTGATAT TGAAGACATT GGAAAAGGTA AAAGAAGGGC AACAGTAGCC
AGACCACGGA ACTGTACTTT GTGTAGGGAA TGCATCAGAG GAGGCAAAGA ATGGGAAGAT CGGATATCAA TACGTCGCGT
TAAACATCAT TTCATTTTTT GCATTGAATC AACCGGAGCA TTACCACCTG AAGTGCTATT TACCGAAGCT GTGAAGATTT
TGGAAGATAA ATGTGAACGT GTGATTACTG AGTTTTCTTG A

[show][hide][copy]PROTEIN

>Vigan.05G206000.01
MSEEDESMGE QSDNKSGLDF ILSLEDVPSK IPPHLELFKT RVMCNSDAPI HTDTIHYSGA YAVLGVDNSQ QFDSFRKNFK
VEVKRLTDSE MEFDMIGIDP AIANAFRRIL ISEVPTMAIE RVYIANNTSV VQDEVLSHRL GLIPIRVDPR LFEYPDNAGD
DNNERNTIVF GLHVRCQVGQ PRITVKSDKL KWLPNGSELP CEDVKPNTSS KPKTFTSFTC SQNSLPGFPS NSIDLTDSDI
ILAKLGPGQE IELEAHAVKG IGRTHAKWSP VATAWYRMLP EVVLLEDIVD EQAEELVKKC QPNVFDIEDI GKGKRRATVA
RPRNCTLCRE CIRGGKEWED RISIRRVKHH FIFCIESTGA LPPEVLFTEA VKILEDKCER VITEFS*