VIGGS:GBrowse

Vigan.05G213500.01

Basic Information:

Name:	Vigan.05G213500.01 Multiple alignment Variant Information
Position:	Chr05:20514703..20516569 (- strand)
Length:	1867

Functional Information:

Description:	Similar to SWIB/MDM2 domain superfamily protein. [XP_007020708.1, Theobroma cacao]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	SWIB/MDM2 domain (IPR003121)
InterPro:	SWIB domain (IPR019835)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:18.90,13.30,5.18,7.60,12.75,19.45,22.46,6.61
Arabidopsis thaliana homolog:	AT4G26810.1

Automatic updates:

Name:	NM_001249121 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527179 (LOC100527179), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:20514703..20515047 (- strand)
Length:	345
Type:	three_prime_UTR

Position:	Chr05:20515048..20515176 (- strand)
Length:	129
Type:	CDS

Position:	Chr05:20516191..20516364 (- strand)
Length:	174
Type:	CDS

Position:	Chr05:20516365..20516569 (- strand)
Length:	205
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G213500.01
AAAAATTAAA ACCCCTTAAA CCTTGTGTGA GTAAAGGTTC TGCTGTGGCA ATGCCCTGCA AACCTCTTTT TTCTCCTCCA
TTGCCATTCA TTTCGTAGCG TCCTTCAAGT TCCAACCACA CTACCCTCTA TTTCTTCGTC AAGCTTCGTG TTTTATCGGT
GCCCAACTCC TTTTAGGCGT TGAATTTCAG GGATTCAAAG CAAAAATGCT CCCTCAGCGC ATGAAGAAAG CCATCACTGA
CAACCCTAAG AAGCTTGCCA ACTTGATTGA CCTCGTCAAC CTTCCATCCA CGCTCAGAGA ATTCGTGGGC CAGTCTCAGA
TTTCCCGTTT GGGTTGTTTC ATGTCGGTTT GGTCCTACAT CAAAGCCAAT AATCTGCAGG ACCCAAACAA CAAGAATGTG
ATCAACTGTG ATGATAAGCT AAAGAGTATT TTGTTGGGGA AACCTCAGGT TGAGTTAGCA GAACTTCCTG CACTTATCAA
GATGCACTTT CCAAAAGAGC CCAAATGACA TCGGTAATAT AATAAAGATG CCTGTTATCT AGGAAAGTGT AGCCTTCCTC
AAGACGAGAT TCTGAATATG TTTCCTTTTT TTGTCTTTTC CTCCATACTG TAACATCATA CGTTTAGGAA TCTAGCTTCA
GAGCCACCGA AATTTGCAGT TTTCTTTATG CTGTATGGAT TGATTAATCT TTTTACATGT GATTCAACTT AAAATGTCCT
GTTTCGCAGC ATGCTTTTGC CACTTTCTAA ATTTTGTAAT TAAACAGTGA CAGTTAGATA TTGATTTTGT ATGCAAATAT
ATATTATGCT TTTATCATTT ATGGCAAGTC ATTTTACAAT TCTTTTTTGA AAA

[show][hide][copy]CDS

>Vigan.05G213500.01
ATGCTCCCTC AGCGCATGAA GAAAGCCATC ACTGACAACC CTAAGAAGCT TGCCAACTTG ATTGACCTCG TCAACCTTCC
ATCCACGCTC AGAGAATTCG TGGGCCAGTC TCAGATTTCC CGTTTGGGTT GTTTCATGTC GGTTTGGTCC TACATCAAAG
CCAATAATCT GCAGGACCCA AACAACAAGA ATGTGATCAA CTGTGATGAT AAGCTAAAGA GTATTTTGTT GGGGAAACCT
CAGGTTGAGT TAGCAGAACT TCCTGCACTT ATCAAGATGC ACTTTCCAAA AGAGCCCAAA TGA

[show][hide][copy]PROTEIN

>Vigan.05G213500.01
MLPQRMKKAI TDNPKKLANL IDLVNLPSTL REFVGQSQIS RLGCFMSVWS YIKANNLQDP NNKNVINCDD KLKSILLGKP
QVELAELPAL IKMHFPKEPK *