GBrowse Details

Vigan.05G217600.01

Basic Information:
Name: Vigan.05G217600.01
Multiple alignment
Variant Information
Position: Chr05:21831484..21851645 (+ strand)
Length: 20162
Functional Information:
Description: Similar to HAUS augmin-like complex subunit. [G7IY17, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.12,20.02,14.44,8.51,18.48,8.90,13.72,10.70
Arabidopsis thaliana homolog: AT1G50710.1
Automatic updates:
Name: NM_001255557 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative HAUS augmin-like complex subunit 4 (LOC100786070), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:21831484..21831557 (+ strand)
Length: 74
Type: five_prime_UTR
Position: Chr05:21831558..21831686 (+ strand)
Length: 129
Type: CDS
Position: Chr05:21831861..21831908 (+ strand)
Length: 48
Type: CDS
Position: Chr05:21832515..21832640 (+ strand)
Length: 126
Type: CDS
Position: Chr05:21832829..21833152 (+ strand)
Length: 324
Type: CDS
Position: Chr05:21833276..21833375 (+ strand)
Length: 100
Type: CDS
Position: Chr05:21833497..21833545 (+ strand)
Length: 49
Type: CDS
Position: Chr05:21848341..21848434 (+ strand)
Length: 94
Type: CDS
Position: Chr05:21848616..21848687 (+ strand)
Length: 72
Type: CDS
Position: Chr05:21848762..21848820 (+ strand)
Length: 59
Type: CDS
Position: Chr05:21849573..21849641 (+ strand)
Length: 69
Type: CDS
Position: Chr05:21849716..21849767 (+ strand)
Length: 52
Type: CDS
Position: Chr05:21850846..21850923 (+ strand)
Length: 78
Type: CDS
Position: Chr05:21851257..21851334 (+ strand)
Length: 78
Type: CDS
Position: Chr05:21851335..21851645 (+ strand)
Length: 311
Type: three_prime_UTR


>Vigan.05G217600.01
AAACTTGGCG CTTCTTCCAG CGGAAGGTAT CAAACACAAC AGTGAAGTGA CTGAAAACGA CACCGTATTG GTAGATGGTG
AAGGGCTTGC ACGGCCAGAA CCTCCCTGCC GACGTGGCGC AGGTGGTTGA TCAGCTGGAG CGCCACTGCT TCGCTCCCGA
TGGATCTCTC ATCTCCAAGC CTCTCTTCAA CGATCTCCAA CTCGCCAGAG AGGAAATGTG CAGGGAAAGA CTGCGTTACC
TGGAAGCCAT GGCGATATAT TCTGAAGCAA TTGCAATGGT GGAAGAGTAT CAACAAGCCA TTTCTGTATC TAACCTTGGC
GGAATTAGAG ATACCGGCAA CCTTTACCCA CAGCTGGGGT TGAGGAACAC TCCTCAGGTT TATCAGACTC TAGAGCATCA
AATGGTTGTT GCTGAAGCAG CTCAACGATT GAGACTACCT CTTATCTCCA AAGATGGGGA AGTTCATGAT GAGGACATTG
AAAAGCTAAG TGTAGTGTCT CGAAGCTCCC TTGACAGTAC TGTTAGTGGG GCCAACTCTT CTAATTATAA CACTCCAAAC
AGCTCTGTTA GTGGGACTAA TTCTGCTCTT GTTGCTTCGG ATCCAGTGGA GCCTGGTGTT GGTGGTGTTC CAAATCGGTT
TTTGGGAATT ACGCCTGCTT ATTTGTGGCA AACTCAACGC CAGAAAACAC CGTTATCTGT GGATATGACT GAATATCGCT
TGTCTGTTTC ACGGGAGGTA GATGCTCGCT TGAAAATGAA ATGTGAAAAG TTATCAGACG CATTTTTATT GGATGATAAT
GATTCTTCAT CGTCTGCAAG TCAAAGTTCA AGTTCTCGAC TTCCAGAAAG GGTGAAATTG TTGATTGAGG AGATTGAAAG
AGAGGAAACA GCACTGCGTG ATGACCTATA TTCTGCAGAT AGAAAGTTTG CCGAATATTA CAATGTCTTG GAGCAGATAC
TTGCAGTGCT TATTAAACTT GTCAAAGATT TGAAGTTGGA GCATCAACAC AAATACGATG ACTTGCAAAA GACTTGGCTC
TGTAAAAGAT GTGAGACCAT GAGTGCTAAA TTGAGGGTTC TAGAACACGT TCTCCTGCTT GAAACTTACA CTAAGGAATC
CATACCTGCC CTTCATAAGA TAAGGAAATA TCTTGTTGAG GCAACTGAAG AAGCTTCTAT TGCATATAAC AAAGCGGTTA
CCCGGCTGCG CGAGTACCAG GGTGTTGATC CTCACTTTGA TAATATTGCA AGGCAGTACC ATGACATTGT GCAGAAATTG
GAGAACATGC AATGGACAAT CCACCAAGTT GAAATGGATT TGAAACGTTT GCCAGATAAA CCTAGCACAT AGAGGTTTTA
TCTCCTTATC TTGCTTTGCA TAGCTTCATG TAAATGATAT TTAAGACGCC CCTTTCCATA ACTCATTATT AATCATGTCC
CTAATGATTG ATAAAGGTGT GTAATCTTCA ATATGTGAGC CTGTTTAAAT ATTTAGACTA CTTTGCATTA CCTTACCTGA
TGATAGAGGA GAAAAAGGAA AGCCAGCTGT TTCTTAGTTT AAGATGCATC GGGGTCTTTA CTCCTTGTAT TCCATCATTT
TAGTTTTTTA CTAGCATCAT TATAACACTA ATATTATTTT AGACTTGATC CTGTGACTTT AAA

>Vigan.05G217600.01
ATGGTGAAGG GCTTGCACGG CCAGAACCTC CCTGCCGACG TGGCGCAGGT GGTTGATCAG CTGGAGCGCC ACTGCTTCGC
TCCCGATGGA TCTCTCATCT CCAAGCCTCT CTTCAACGAT CTCCAACTCG CCAGAGAGGA AATGTGCAGG GAAAGACTGC
GTTACCTGGA AGCCATGGCG ATATATTCTG AAGCAATTGC AATGGTGGAA GAGTATCAAC AAGCCATTTC TGTATCTAAC
CTTGGCGGAA TTAGAGATAC CGGCAACCTT TACCCACAGC TGGGGTTGAG GAACACTCCT CAGGTTTATC AGACTCTAGA
GCATCAAATG GTTGTTGCTG AAGCAGCTCA ACGATTGAGA CTACCTCTTA TCTCCAAAGA TGGGGAAGTT CATGATGAGG
ACATTGAAAA GCTAAGTGTA GTGTCTCGAA GCTCCCTTGA CAGTACTGTT AGTGGGGCCA ACTCTTCTAA TTATAACACT
CCAAACAGCT CTGTTAGTGG GACTAATTCT GCTCTTGTTG CTTCGGATCC AGTGGAGCCT GGTGTTGGTG GTGTTCCAAA
TCGGTTTTTG GGAATTACGC CTGCTTATTT GTGGCAAACT CAACGCCAGA AAACACCGTT ATCTGTGGAT ATGACTGAAT
ATCGCTTGTC TGTTTCACGG GAGGTAGATG CTCGCTTGAA AATGAAATGT GAAAAGTTAT CAGACGCATT TTTATTGGAT
GATAATGATT CTTCATCGTC TGCAAGTCAA AGTTCAAGTT CTCGACTTCC AGAAAGGGTG AAATTGTTGA TTGAGGAGAT
TGAAAGAGAG GAAACAGCAC TGCGTGATGA CCTATATTCT GCAGATAGAA AGTTTGCCGA ATATTACAAT GTCTTGGAGC
AGATACTTGC AGTGCTTATT AAACTTGTCA AAGATTTGAA GTTGGAGCAT CAACACAAAT ACGATGACTT GCAAAAGACT
TGGCTCTGTA AAAGATGTGA GACCATGAGT GCTAAATTGA GGGTTCTAGA ACACGTTCTC CTGCTTGAAA CTTACACTAA
GGAATCCATA CCTGCCCTTC ATAAGATAAG GAAATATCTT GTTGAGGCAA CTGAAGAAGC TTCTATTGCA TATAACAAAG
CGGTTACCCG GCTGCGCGAG TACCAGGGTG TTGATCCTCA CTTTGATAAT ATTGCAAGGC AGTACCATGA CATTGTGCAG
AAATTGGAGA ACATGCAATG GACAATCCAC CAAGTTGAAA TGGATTTGAA ACGTTTGCCA GATAAACCTA GCACATAG

>Vigan.05G217600.01
MVKGLHGQNL PADVAQVVDQ LERHCFAPDG SLISKPLFND LQLAREEMCR ERLRYLEAMA IYSEAIAMVE EYQQAISVSN
LGGIRDTGNL YPQLGLRNTP QVYQTLEHQM VVAEAAQRLR LPLISKDGEV HDEDIEKLSV VSRSSLDSTV SGANSSNYNT
PNSSVSGTNS ALVASDPVEP GVGGVPNRFL GITPAYLWQT QRQKTPLSVD MTEYRLSVSR EVDARLKMKC EKLSDAFLLD
DNDSSSSASQ SSSSRLPERV KLLIEEIERE ETALRDDLYS ADRKFAEYYN VLEQILAVLI KLVKDLKLEH QHKYDDLQKT
WLCKRCETMS AKLRVLEHVL LLETYTKESI PALHKIRKYL VEATEEASIA YNKAVTRLRE YQGVDPHFDN IARQYHDIVQ
KLENMQWTIH QVEMDLKRLP DKPST*