GBrowse Details

Vigan.05G222100.01

Basic Information:
Name: Vigan.05G222100.01
Multiple alignment
Variant Information
Position: Chr05:23684489..23688879 (+ strand)
Length: 4391
Functional Information:
Description: Similar to Uncharacterized protein. [K7LXA6, Glycine max]
GO: Biological Process: terpenoid biosynthetic process (GO:0016114)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515)
InterPro: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (IPR004424)
GHMP kinase N-terminal domain (IPR006204)
GHMP kinase, C-terminal domain (IPR013750)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.85,14.10,23.88,25.89,13.01,13.08,19.64,14.44
Arabidopsis thaliana homolog: AT2G26930.1
Automatic updates:
Name: NM_001255958 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like (LOC100812541), mRNA; nuclear gene for chloroplast product.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:23684489..23684738 (+ strand)
Length: 250
Type: five_prime_UTR
Position: Chr05:23684739..23684927 (+ strand)
Length: 189
Type: CDS
Position: Chr05:23685174..23685269 (+ strand)
Length: 96
Type: CDS
Position: Chr05:23685353..23685421 (+ strand)
Length: 69
Type: CDS
Position: Chr05:23685536..23685640 (+ strand)
Length: 105
Type: CDS
Position: Chr05:23685731..23685787 (+ strand)
Length: 57
Type: CDS
Position: Chr05:23685924..23686124 (+ strand)
Length: 201
Type: CDS
Position: Chr05:23686638..23686730 (+ strand)
Length: 93
Type: CDS
Position: Chr05:23686816..23686915 (+ strand)
Length: 100
Type: CDS
Position: Chr05:23687173..23687272 (+ strand)
Length: 100
Type: CDS
Position: Chr05:23687722..23687807 (+ strand)
Length: 86
Type: CDS
Position: Chr05:23688418..23688515 (+ strand)
Length: 98
Type: CDS
Position: Chr05:23688516..23688879 (+ strand)
Length: 364
Type: three_prime_UTR


>Vigan.05G222100.01
CTTTAATCAG TCCCCCATTA AAGCCTGCTC TGCTACCCAG ACTCTGAAAA AAACATGTAA AGAAGTAATT TGTCGGCTTT
GACCGTTTGA ATTAGAGTTT TAAAACAGTG TTTAAACCAT TCTTAAGAAT TTTTCCTACC GGCACAATTG AATTTGACCA
GATTTTGTAG GAAGAATAAA CGAACAAGAA GCGCTTTTTT TGACGTACCC AATCTGTAGC TGAATTGAAG TTCCGATCTT
TCAACCACAC ATGGCTGCGT CTCACCTTCT TTGCAGTAGC TATGTCTTCC CCACTTCTCA AAACTCCTTC AGAAGTAGCC
ATTTTTCTCA ATTCAGACCA AATGGGTCAT CCACTTTTCA TTCTAAGCTT CGGTTTCAGA GACCTCACTT GGTTAGAGCC
ATGGTTTCCG ATTCCAATAC TTCTAAGAGA CAAGTAGAGA TTGTGTATGA CCCTGAAGCA AGGATTAACA AGTTGGCTGA
TGAAGTGGAC AGGGAAGCTC CCCTTTCTAG GCTTACTTTG TTCTCTCCTT GCAAGATAAA TGTTTTCTTG AGAATAACAA
ACAAGAGGGA AGATGGGTAT CATGACTTGG CATCCCTTTT TCATGTGATA AGTCTAGGTG ACATAATTAA GTTCTCTTTG
TCACCTTCAA AAACCAAGGA TAGTCTATCA ACCAATGTGT CTGGGGTGCC CCTTGATGAT AGAAATCTGA TTATTAAGGC
GCTTAACCTT TATAGGAAGA AGACTGGTAG TGACAAGTTC TTTTGGATTC ATCTGGATAA ACGCGTGCCT ACTGGGGCAG
GGCTTGGGGG TGGAAGTAGC AATGCTGCAA CTGCACTATG GGCAGCAAAT CAATTCAGTG GTTGCCTTGC TTCAGAGAAA
GAACTCCAAG AATGGTCAAG TGAGATTGGA TCAGATATTC CCTTCTTTTT CTCTCAGGGA GCAGCCTATT GCACTGGTCG
AGGAGAGGTT GTTCAGAATA TTCCTCCACC AGTATCTCTG GACGTTCCAA TGGTTCTCAT AAAGCCCCCA GAAGCATGTT
CGACTGCAGA AGTCTACAAG CGTCTACGTT TGGACCAGAC TAGTAATGTT GATCCTTTAA CATTGTTGGA CAAGATCTCA
AAAATTGGAA TCTCACAAGA TGTTTGTATT AATGATTTAG AACCTCCCGC GTTTGAAGTT CTCCCATCTC TCAAAAGACT
GAAGCAGCGC ATTAGTGCAG CTGGTCGTGG AGAATATGGT GCTGTTTTTA TGTCAGGAAG TGGAAGCACC ATTGTTGGAA
TTGGCTCTCC TGATCCTCCA CAATTTGTTT ATGATGATGA TGAATACAAA GATGTGTTCT TATCAGATGC CTATTTTCTC
ACTAGGGAGG CAAACCAGTG GTATCAAGAA CCTGCTTCAA ATCCTTCTTC TGCCTCTGCT TCTGTTGTTT CAGACTCTGT
TTAAGCATAT GGTCTTTCAA GATAAGAAGA CAGTAATGCA GAATTGCATT ATCTTGTCTT TTTCTCCTGC ATCATTCAAT
GATGTAAAAA TTAAGTTTTG CAATTTAACT GCTGGGAAAC AATAAAGTTA GAGAGATAAT CGGTTGAATA AATATTAAGG
AGGGCTTCTA AGAAGTAACA ATGTCCGAAT AATTTGTCGT GGTTATTAGC AATTATTCAG AGACCCCAAA AATTAATGTT
GCAAGTTAAA GATGATCTTA GTTTGTTTCA AAGTTGGATG GTCTTTTTGA TTTTTGAATC ACTTAATGTA ATTAACATTG
GAATGTTTAT ATGGTGAAAA TTTGATTTTT GATATTTTAC CTGCACAG

>Vigan.05G222100.01
ATGGCTGCGT CTCACCTTCT TTGCAGTAGC TATGTCTTCC CCACTTCTCA AAACTCCTTC AGAAGTAGCC ATTTTTCTCA
ATTCAGACCA AATGGGTCAT CCACTTTTCA TTCTAAGCTT CGGTTTCAGA GACCTCACTT GGTTAGAGCC ATGGTTTCCG
ATTCCAATAC TTCTAAGAGA CAAGTAGAGA TTGTGTATGA CCCTGAAGCA AGGATTAACA AGTTGGCTGA TGAAGTGGAC
AGGGAAGCTC CCCTTTCTAG GCTTACTTTG TTCTCTCCTT GCAAGATAAA TGTTTTCTTG AGAATAACAA ACAAGAGGGA
AGATGGGTAT CATGACTTGG CATCCCTTTT TCATGTGATA AGTCTAGGTG ACATAATTAA GTTCTCTTTG TCACCTTCAA
AAACCAAGGA TAGTCTATCA ACCAATGTGT CTGGGGTGCC CCTTGATGAT AGAAATCTGA TTATTAAGGC GCTTAACCTT
TATAGGAAGA AGACTGGTAG TGACAAGTTC TTTTGGATTC ATCTGGATAA ACGCGTGCCT ACTGGGGCAG GGCTTGGGGG
TGGAAGTAGC AATGCTGCAA CTGCACTATG GGCAGCAAAT CAATTCAGTG GTTGCCTTGC TTCAGAGAAA GAACTCCAAG
AATGGTCAAG TGAGATTGGA TCAGATATTC CCTTCTTTTT CTCTCAGGGA GCAGCCTATT GCACTGGTCG AGGAGAGGTT
GTTCAGAATA TTCCTCCACC AGTATCTCTG GACGTTCCAA TGGTTCTCAT AAAGCCCCCA GAAGCATGTT CGACTGCAGA
AGTCTACAAG CGTCTACGTT TGGACCAGAC TAGTAATGTT GATCCTTTAA CATTGTTGGA CAAGATCTCA AAAATTGGAA
TCTCACAAGA TGTTTGTATT AATGATTTAG AACCTCCCGC GTTTGAAGTT CTCCCATCTC TCAAAAGACT GAAGCAGCGC
ATTAGTGCAG CTGGTCGTGG AGAATATGGT GCTGTTTTTA TGTCAGGAAG TGGAAGCACC ATTGTTGGAA TTGGCTCTCC
TGATCCTCCA CAATTTGTTT ATGATGATGA TGAATACAAA GATGTGTTCT TATCAGATGC CTATTTTCTC ACTAGGGAGG
CAAACCAGTG GTATCAAGAA CCTGCTTCAA ATCCTTCTTC TGCCTCTGCT TCTGTTGTTT CAGACTCTGT TTAA

>Vigan.05G222100.01
MAASHLLCSS YVFPTSQNSF RSSHFSQFRP NGSSTFHSKL RFQRPHLVRA MVSDSNTSKR QVEIVYDPEA RINKLADEVD
REAPLSRLTL FSPCKINVFL RITNKREDGY HDLASLFHVI SLGDIIKFSL SPSKTKDSLS TNVSGVPLDD RNLIIKALNL
YRKKTGSDKF FWIHLDKRVP TGAGLGGGSS NAATALWAAN QFSGCLASEK ELQEWSSEIG SDIPFFFSQG AAYCTGRGEV
VQNIPPPVSL DVPMVLIKPP EACSTAEVYK RLRLDQTSNV DPLTLLDKIS KIGISQDVCI NDLEPPAFEV LPSLKRLKQR
ISAAGRGEYG AVFMSGSGST IVGIGSPDPP QFVYDDDEYK DVFLSDAYFL TREANQWYQE PASNPSSASA SVVSDSV*