GBrowse Details

Vigan.05G222300.01

Basic Information:
Name: Vigan.05G222300.01
Multiple alignment
Variant Information
Position: Chr05:23809602..23815505 (+ strand)
Length: 5904
Functional Information:
Description: Similar to Flavonoid 3'5'-hydroxylase. [D9N1C2, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.29,4.98,25.99,0.14,0.00,114.11,0.48,1.72
Automatic updates:
Name: LC010617 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max W1 mRNA for flavonoid 3'5'-hydroxylase, complete cds, cultivar: Bay.
PubMed ID: -
Status: Known Variant
Name: LC010618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max W1 mRNA for flavonoid 3'5'-hydroxylase, complete cds, strain: E023-H-12.
PubMed ID: -
Status: Known Variant
Name: LC010619 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max W1 mRNA for flavonoid 3'5'-hydroxylase, complete cds, strain: L63-2373.
PubMed ID: -
Status: Known Variant
Name: NM_001249703 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max flavonoid 3', 5'-hydroxylase (W1), mRNA.
PubMed ID: 20663233 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:23809602..23809714 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr05:23809715..23810074 (+ strand)
Length: 360
Type: CDS
Position: Chr05:23811188..23811739 (+ strand)
Length: 552
Type: CDS
Position: Chr05:23814698..23815330 (+ strand)
Length: 633
Type: CDS
Position: Chr05:23815331..23815505 (+ strand)
Length: 175
Type: three_prime_UTR


>Vigan.05G222300.01
TGCCCTGCCA AACTCCACAC GACACCACAC CAAACATCAT CCTATGTTAT GTATATATGT CCCCCGGAGC TATCAAATTC
TCCACACTTA GTTCATAGCC AGTTCGTTAG ATTATGTTTG TCACCATGGA CACCTTGTTC CTTGTGAAGG AAATTTCTGC
GTCAATTTTT ATTTTCTTGG TGACCCTTTT GTCCATTCGC ACACTCTTCA AACGCCGTGG CCGGAAGCTG CCGCCGGGGC
CAAGAGGGTG GCCTGTGGTT GGTGAACTTC CTCTTATGGG AAGCATGCCC CATGTGACAT TGGCTAATAT GGCAAAGAAA
TATGGATCGG TTATGTACCT AAAAATGGGT AGTAACAACA TGGTTGTGGC TTCTACTCCT GCCGCTGCTC GTGCCTTCCT
TAAAACCCTT GACCAAAACT TCTCCAATCG GCCTCCAAAT GCTGGTGCAA CCCACTTGGC TTATGATGCA CAGGACATGG
TGTTTGCTGA ATATGGATCA AGGTGGAAAT TGCTGAGGAA ACTAAGCAAC TTGCACATGC TTGGAGGAAG GGCTCTTGAT
GAGTGGGGAA AGGTTCGAGA AGAAGAGATG GGGCAGATGC TGGGTAGCAT GTACGAGTGT AGCAAGAGGG GTGAAGCTGT
GGTGGTGCCT GAGATGCTCA CTTACTCTAT GGCCAACATG ATAGGCCAAG TCATACTCAG TCGTCGAGTG TTCGAGTCCA
AGGGTTCTGA CTCAAACCAG TTCAAGGACA TGGTGGTCGA GCTCATGACT GTTGCAGGCT ACTTCAACAT TGGCGATTTC
ATACCCTTCT TGGCCAAATT GGACCTTCAA GGTATAGAGC GTGAGATGAA GCACTTGCAC AACAAGTTTG ATGTGTTGCT
CACAAACATG ATTCAGAACC ATGTGGCTTC TAAGCATAAG AGAAAGAATA AACCCGATTT CTTGGACATG GTCATGGCTC
ATTATGGTGA AGACGACGCT CATGGGGACA AACTCTCACT CATCAACGTC AAGGCACTGC TACTCAACCT ATTCACAGCG
GGAACTGACA CGTCTTCAAG CATCATAGAG TGGTCCTTAG CAGAGATGCT GAAGAACCCG AGCATCATGA AGAAGGCTCA
CGAGGAAATG GACAAAGTGA TAGGCAGGGA GCGCCGCCTC AAAGAATCCG ACATCCCAAA CCTTCCCTAC TTCCAAGCCA
TATGCAAAGA GACCTACAGA AAGCACCCTT CAACTCCTCT CAACCTCCCT CGAATCTCCA AACAACCATG CCAAGTTAAC
GGCTTCTACA TCCCCGAGAA CACTCGCTTG AGTGTCAACA TCTGGGCCAT TGGGAGAGAC CCCCAAGTGT GGGACAAACC
CCTCGAGTTT AAGCCAGAGA GGTTCTTGAG TGGCAGGAAC AAAATGATCG ACCCACGTGG CAATGACTTC GAGTTAATAC
CCTTCGGCGC CGGGCGAAGG ATCTGCGCCG GCACCAGAAT GGGGATTGTC TTAGTGCACT ACATTTTGGG AACCTTGGTT
CATTCCTTTG ATTGGAAGGT GCCACGTGAA GCGGGGGAAT TGAACATGGA GGAGACCTTT GGTCTTGCCT TGCAGAAAAA
GGTTCCTCTT GCTGCTTTGG TTACTCCTAG GTTGACTCCT AATGCTTACA TTCCTTAGAT TACCTTTCTT ATAAGCTTTC
TTCTCCAATG CTTCTGTGGT AGCTGATTAT CTATATAGCT ACTGAATAAG TGTTTGTGTT AGCACAACCA GTTGCTGTTT
CTAAATATCT TCTGATTCAG GCTTATCTAA TTTGTTTTCG GTTAATTATG TTTTATGTTA TTCGTAGGCG ACT

>Vigan.05G222300.01
ATGTTTGTCA CCATGGACAC CTTGTTCCTT GTGAAGGAAA TTTCTGCGTC AATTTTTATT TTCTTGGTGA CCCTTTTGTC
CATTCGCACA CTCTTCAAAC GCCGTGGCCG GAAGCTGCCG CCGGGGCCAA GAGGGTGGCC TGTGGTTGGT GAACTTCCTC
TTATGGGAAG CATGCCCCAT GTGACATTGG CTAATATGGC AAAGAAATAT GGATCGGTTA TGTACCTAAA AATGGGTAGT
AACAACATGG TTGTGGCTTC TACTCCTGCC GCTGCTCGTG CCTTCCTTAA AACCCTTGAC CAAAACTTCT CCAATCGGCC
TCCAAATGCT GGTGCAACCC ACTTGGCTTA TGATGCACAG GACATGGTGT TTGCTGAATA TGGATCAAGG TGGAAATTGC
TGAGGAAACT AAGCAACTTG CACATGCTTG GAGGAAGGGC TCTTGATGAG TGGGGAAAGG TTCGAGAAGA AGAGATGGGG
CAGATGCTGG GTAGCATGTA CGAGTGTAGC AAGAGGGGTG AAGCTGTGGT GGTGCCTGAG ATGCTCACTT ACTCTATGGC
CAACATGATA GGCCAAGTCA TACTCAGTCG TCGAGTGTTC GAGTCCAAGG GTTCTGACTC AAACCAGTTC AAGGACATGG
TGGTCGAGCT CATGACTGTT GCAGGCTACT TCAACATTGG CGATTTCATA CCCTTCTTGG CCAAATTGGA CCTTCAAGGT
ATAGAGCGTG AGATGAAGCA CTTGCACAAC AAGTTTGATG TGTTGCTCAC AAACATGATT CAGAACCATG TGGCTTCTAA
GCATAAGAGA AAGAATAAAC CCGATTTCTT GGACATGGTC ATGGCTCATT ATGGTGAAGA CGACGCTCAT GGGGACAAAC
TCTCACTCAT CAACGTCAAG GCACTGCTAC TCAACCTATT CACAGCGGGA ACTGACACGT CTTCAAGCAT CATAGAGTGG
TCCTTAGCAG AGATGCTGAA GAACCCGAGC ATCATGAAGA AGGCTCACGA GGAAATGGAC AAAGTGATAG GCAGGGAGCG
CCGCCTCAAA GAATCCGACA TCCCAAACCT TCCCTACTTC CAAGCCATAT GCAAAGAGAC CTACAGAAAG CACCCTTCAA
CTCCTCTCAA CCTCCCTCGA ATCTCCAAAC AACCATGCCA AGTTAACGGC TTCTACATCC CCGAGAACAC TCGCTTGAGT
GTCAACATCT GGGCCATTGG GAGAGACCCC CAAGTGTGGG ACAAACCCCT CGAGTTTAAG CCAGAGAGGT TCTTGAGTGG
CAGGAACAAA ATGATCGACC CACGTGGCAA TGACTTCGAG TTAATACCCT TCGGCGCCGG GCGAAGGATC TGCGCCGGCA
CCAGAATGGG GATTGTCTTA GTGCACTACA TTTTGGGAAC CTTGGTTCAT TCCTTTGATT GGAAGGTGCC ACGTGAAGCG
GGGGAATTGA ACATGGAGGA GACCTTTGGT CTTGCCTTGC AGAAAAAGGT TCCTCTTGCT GCTTTGGTTA CTCCTAGGTT
GACTCCTAAT GCTTACATTC CTTAG

>Vigan.05G222300.01
MFVTMDTLFL VKEISASIFI FLVTLLSIRT LFKRRGRKLP PGPRGWPVVG ELPLMGSMPH VTLANMAKKY GSVMYLKMGS
NNMVVASTPA AARAFLKTLD QNFSNRPPNA GATHLAYDAQ DMVFAEYGSR WKLLRKLSNL HMLGGRALDE WGKVREEEMG
QMLGSMYECS KRGEAVVVPE MLTYSMANMI GQVILSRRVF ESKGSDSNQF KDMVVELMTV AGYFNIGDFI PFLAKLDLQG
IEREMKHLHN KFDVLLTNMI QNHVASKHKR KNKPDFLDMV MAHYGEDDAH GDKLSLINVK ALLLNLFTAG TDTSSSIIEW
SLAEMLKNPS IMKKAHEEMD KVIGRERRLK ESDIPNLPYF QAICKETYRK HPSTPLNLPR ISKQPCQVNG FYIPENTRLS
VNIWAIGRDP QVWDKPLEFK PERFLSGRNK MIDPRGNDFE LIPFGAGRRI CAGTRMGIVL VHYILGTLVH SFDWKVPREA
GELNMEETFG LALQKKVPLA ALVTPRLTPN AYIP*