VIGGS:GBrowse

Vigan.05G229700.01

Basic Information:

Name:	Vigan.05G229700.01 Multiple alignment Variant Information
Position:	Chr05:26183890..26189695 (- strand)
Length:	5806

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LWA7, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Basic-leucine zipper domain (IPR004827)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:20.92,21.82,6.79,4.92,4.74,4.36,5.98,6.15

Automatic updates:

Name:	NM_001358708 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max bZIP transcription factor 27 (BZIP27), mRNA.
PubMed ID:	18365246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:26183890..26184437 (- strand)
Length:	548
Type:	three_prime_UTR

Position:	Chr05:26184438..26184518 (- strand)
Length:	81
Type:	CDS

Position:	Chr05:26188517..26188588 (- strand)
Length:	72
Type:	CDS

Position:	Chr05:26188687..26189349 (- strand)
Length:	663
Type:	CDS

Position:	Chr05:26189350..26189695 (- strand)
Length:	346
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G229700.01
GTAAAAGTCT ATTTTTTTTT TATGCTGTCC TTTTGCTGTG TGATCTTGTG TGATGGTTTT TGATTAAGTG GGATTGATCA
TAATTTGTGA ATCATAAAGT TTGAGTCTCG ATGGGTTCTT TGGGTTGAAA TCCCAACTCT TTTGTTGTTA TGGTGTCTTT
CTGGGGACCC CAGATAGGGG GGAGTGTTGG GATTTTGAAA AAGGTTGGAA ATTTGTTTAG GGAAAAGCTT TGGAGTGGTG
TTTTTGATTG GGATGTGAGT GAGTTAGGAT CCAAGTGCAA TGGTTAATGT TTTAGTTATT TATTTTATTG TTGCTTTGTG
GTTACAACTT ACAGGTTTTA GTTTGAATGG GGATTCAGAC AATGGGATCT CAAGGTAATG GGCAACAGTC TCATTTACAG
TCTTCATCTT TGTCTAGGCA AGGTTCATGG TATAATCTTA CTCTTGATGA GGTTAATAGT CAATTAGGAG ACTTAGGGAA
GCCATTGGGT AGCATGAACC TTGACGAGCT TCTTCAAAAT GTGTGGACTG CCGAAGCAAG TAAGTCTTCG GTGATAGGTG
CGGATAGTGA GAACATTTCG TCCTCTTCCT CCCTTCAGCG GCAGGCCAGC CTGACGCTGG CTCGTGCATT GAGTGGGAAG
ACTGTGGATG ACGTGTGGAG GGAAATTCAG CAAGGGCAGA AGAAAAGGTA TGGAGGGGAA GTGAAAACTC AGGAGGGAGA
AATGACTTTT GGTGAGACAA CCTTGGAAGA TTTCTTGGTG CAAGCAGGGC TTTTTGCTGA AGCTTCTATC AGTCCAGCTG
TGGGGTTGGA TACAATGGAT TTCTCAGCAG CTCAAGGTTT CCAGCAGAAA ACGGGCTTGT CTTCATCCCC TTCTATTGGC
AGTTTATCGG ACACGAGACC GGGCAGGAAA AGGGATGCTC CTGATGCATA TGAGAAAACC CTGGAGAGGA GGTTGAGGAG
GAAGATCAAG AATAGGGAAT CTGCTGCTAG GTCACGAGCT CGTAAACAGG CTTACCATAA TGAACTGGTT GGCAAGGTTT
CCCGTCTAGA AGAAGAAAAT GTAAAGCTAA AGAAAGAGAA GGAATTTGAA GAAAGGTTTA CTCCCGATCC ATTGCCTGAA
CCAAAATATC AACTTCAAAG ACATAACTCT GCCCCTTTCT GACATCTGCA ATGGAGTTTT CTGGCTATTC ATGTTCTTGA
TTTGATGAGG ACATGTCCAG GACTATATCA CTGCAATGCT CATTGCTGTT GCCACTGCTT TGCATTTTCT CTGGCAGAGG
ACGGTTTGCT CTATATCTAC AATTAGCTAA CTATAGGGGT ACATACGCAG CAAAGGTTTG ATGTTCATAA GCTTTAGCTT
TGGTTGGAAA CGGTATCAGG AAATATTGGA AGCCAATGGA AACCTGAAAG TTAGTTACCT TTTTGTATAA TGGTTATATG
TGTGTATTAG GGCAATTGTT AAGCAGTTAA GTTATTGAAA GGTGACTAGA AAAAAGCTGA AACTAGGTAA GGTAGGTATT
GTTAGCAGTT CTGAACTGCA ATATTGTATT AGATTAAATT GATATTTGTC TACAAGTTTT TAAGGGATAT CAAGTTATGA
GAATTAGTAT GCTCTGTAGA GATAGTTTTC CAGAAAAGAT GAAATAACAA AAGAAACGTT TGTTTATTAT GTTTTCTAGT
GCAGTTTGCC ACCATGAACA TGTGTTTTAT

[show][hide][copy]CDS

>Vigan.05G229700.01
ATGGGGATTC AGACAATGGG ATCTCAAGGT AATGGGCAAC AGTCTCATTT ACAGTCTTCA TCTTTGTCTA GGCAAGGTTC
ATGGTATAAT CTTACTCTTG ATGAGGTTAA TAGTCAATTA GGAGACTTAG GGAAGCCATT GGGTAGCATG AACCTTGACG
AGCTTCTTCA AAATGTGTGG ACTGCCGAAG CAAGTAAGTC TTCGGTGATA GGTGCGGATA GTGAGAACAT TTCGTCCTCT
TCCTCCCTTC AGCGGCAGGC CAGCCTGACG CTGGCTCGTG CATTGAGTGG GAAGACTGTG GATGACGTGT GGAGGGAAAT
TCAGCAAGGG CAGAAGAAAA GGTATGGAGG GGAAGTGAAA ACTCAGGAGG GAGAAATGAC TTTTGGTGAG ACAACCTTGG
AAGATTTCTT GGTGCAAGCA GGGCTTTTTG CTGAAGCTTC TATCAGTCCA GCTGTGGGGT TGGATACAAT GGATTTCTCA
GCAGCTCAAG GTTTCCAGCA GAAAACGGGC TTGTCTTCAT CCCCTTCTAT TGGCAGTTTA TCGGACACGA GACCGGGCAG
GAAAAGGGAT GCTCCTGATG CATATGAGAA AACCCTGGAG AGGAGGTTGA GGAGGAAGAT CAAGAATAGG GAATCTGCTG
CTAGGTCACG AGCTCGTAAA CAGGCTTACC ATAATGAACT GGTTGGCAAG GTTTCCCGTC TAGAAGAAGA AAATGTAAAG
CTAAAGAAAG AGAAGGAATT TGAAGAAAGG TTTACTCCCG ATCCATTGCC TGAACCAAAA TATCAACTTC AAAGACATAA
CTCTGCCCCT TTCTGA

[show][hide][copy]PROTEIN

>Vigan.05G229700.01
MGIQTMGSQG NGQQSHLQSS SLSRQGSWYN LTLDEVNSQL GDLGKPLGSM NLDELLQNVW TAEASKSSVI GADSENISSS
SSLQRQASLT LARALSGKTV DDVWREIQQG QKKRYGGEVK TQEGEMTFGE TTLEDFLVQA GLFAEASISP AVGLDTMDFS
AAQGFQQKTG LSSSPSIGSL SDTRPGRKRD APDAYEKTLE RRLRRKIKNR ESAARSRARK QAYHNELVGK VSRLEEENVK
LKKEKEFEER FTPDPLPEPK YQLQRHNSAP F*