GBrowse Details

Vigan.05G238600.01

Basic Information:
Name: Vigan.05G238600.01
Multiple alignment
Variant Information
Position: Chr05:28670829..28673877 (+ strand)
Length: 3049
Functional Information:
Description: Similar to Uncharacterized protein. [I1KXW9, Glycine max]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbP, oxygen evolving complex (IPR002683)
Mog1/PsbP, alpha/beta/alpha sandwich (IPR016123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.23,0.50,214.78,1915.53,0.86,289.75,5.90,260.43
Arabidopsis thaliana homolog: AT1G06680.1
Automatic updates:
Name: NM_001289207 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max oxygen-evolving enhancer protein 2, chloroplastic-like (LOC100781848), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:28670829..28670994 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr05:28670995..28671238 (+ strand)
Length: 244
Type: CDS
Position: Chr05:28672327..28672559 (+ strand)
Length: 233
Type: CDS
Position: Chr05:28672747..28672797 (+ strand)
Length: 51
Type: CDS
Position: Chr05:28673298..28673558 (+ strand)
Length: 261
Type: CDS
Position: Chr05:28673559..28673877 (+ strand)
Length: 319
Type: three_prime_UTR


>Vigan.05G238600.01
CACCAATCAT GACCTCCAAA TGCAATTATC CACAACCAAC CACATTTTGA TTGCCACATC ATCCACCACA CATCAAAACC
ACTTCAAAGT CCACACACAC ACACTTTGCC TACTACACTG TAATCACAGG CCAAAGAACC TGTGAAGATT TTGAGTTTTG
AGCACAATGG CCTCCACCCA ATGTTTCCTG CACCACCATG CCCTCACCAA CCCTGCTAGA GCTTCACCAC AGCGCCAGGT
GCTGACCACC AAACCTAACC ACATTGTCTG CAAGTCACAG AAGCAGGTTG TCCAAGAGGG TGATGCCAAC ACCACCCTTG
TCTCTCGCAG GTTGGCCCTC ACTGTGCTCA TTGGTGCTGC TGCTGTCGGC TCCAAGGTCT CTCCTGCTGA TGCAGCCTAT
GGGGAAGCTG CCAATGTGTT TGGAAAGCCA AAGACAAACA CAGACTTCCT TCCATACAGT GGAAATGGAT TCAAACTCTC
AATTCCCTCA AAGTGGAACC CAAGCAAAGA GGTTGAGTAC CCAGGTCAGG TTCTGAGATA TGAGGACAAT TTTGACACAA
CAAGCAATGT TGCTGTCATG GTCACTGCAA CTGATAAGAC GTCTATCACT GACTATGGTT CACCTGAGGA GTTTCTATCT
AAGGTGGATT ATTTGCTAGG GAAACAAGCC TTCTTTGGCC AAACTGACTC TGAGGGTGGT TTTGATTCCA ATGCTGTAGC
AACTGCAAAC ATCTTGGAGA GTGCAACACC TGTCATTGAT GGGAAAAAGT ACTACAGTTT GACTGTGTTA ACAAGAACAG
CTGATGGAGA TGAAGGTGGG AAGCACCAGC TGATTACAGC AACTGTGAAA GATGGCAAAC TATACATCTG CAAGGCTCAA
GCTGGAGACA AGAGGTGGTT TAAGGGAGCA AGAAAATTTG TGGAGAGTAC AGCAAGTTCC TTCAGTGTTG CCTAAGAACA
TGGTGAATGT TCACTCTGCA TGTAAATCAT CTTGAAGGGT GTGTATGTCT TGAATTATGT GCTTTTTGTC CACAAGTTCC
ATTATTTGAG GCAGTTGGTT GGAGTAAGAA CTTTGATTCT TAATTTTTCA TGTCTTCTAA GGACTTGCCC TCATCTCTTG
TACCCTTTTG GATTAAGCAT TTTAAGTTGC TATAAGCCAT ATTAAGAACC ATTATGTTTA TAAAAGGCTC AAGGGCCCTT
TTAAAAGGAA GGTGCTTGAA ATATTTTGTA ATCATTTTGT TTTTAATTTC AAAACATAAC TTTATTAATG GGAA

>Vigan.05G238600.01
ATGGCCTCCA CCCAATGTTT CCTGCACCAC CATGCCCTCA CCAACCCTGC TAGAGCTTCA CCACAGCGCC AGGTGCTGAC
CACCAAACCT AACCACATTG TCTGCAAGTC ACAGAAGCAG GTTGTCCAAG AGGGTGATGC CAACACCACC CTTGTCTCTC
GCAGGTTGGC CCTCACTGTG CTCATTGGTG CTGCTGCTGT CGGCTCCAAG GTCTCTCCTG CTGATGCAGC CTATGGGGAA
GCTGCCAATG TGTTTGGAAA GCCAAAGACA AACACAGACT TCCTTCCATA CAGTGGAAAT GGATTCAAAC TCTCAATTCC
CTCAAAGTGG AACCCAAGCA AAGAGGTTGA GTACCCAGGT CAGGTTCTGA GATATGAGGA CAATTTTGAC ACAACAAGCA
ATGTTGCTGT CATGGTCACT GCAACTGATA AGACGTCTAT CACTGACTAT GGTTCACCTG AGGAGTTTCT ATCTAAGGTG
GATTATTTGC TAGGGAAACA AGCCTTCTTT GGCCAAACTG ACTCTGAGGG TGGTTTTGAT TCCAATGCTG TAGCAACTGC
AAACATCTTG GAGAGTGCAA CACCTGTCAT TGATGGGAAA AAGTACTACA GTTTGACTGT GTTAACAAGA ACAGCTGATG
GAGATGAAGG TGGGAAGCAC CAGCTGATTA CAGCAACTGT GAAAGATGGC AAACTATACA TCTGCAAGGC TCAAGCTGGA
GACAAGAGGT GGTTTAAGGG AGCAAGAAAA TTTGTGGAGA GTACAGCAAG TTCCTTCAGT GTTGCCTAA

>Vigan.05G238600.01
MASTQCFLHH HALTNPARAS PQRQVLTTKP NHIVCKSQKQ VVQEGDANTT LVSRRLALTV LIGAAAVGSK VSPADAAYGE
AANVFGKPKT NTDFLPYSGN GFKLSIPSKW NPSKEVEYPG QVLRYEDNFD TTSNVAVMVT ATDKTSITDY GSPEEFLSKV
DYLLGKQAFF GQTDSEGGFD SNAVATANIL ESATPVIDGK KYYSLTVLTR TADGDEGGKH QLITATVKDG KLYICKAQAG
DKRWFKGARK FVESTASSFS VA*